Mercurial > repos > fcaramia > contra

annotate tool_dependencies.xml @ 7:576f9c85da25

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Deleted selected files
author fcaramia
date Sun, 02 Dec 2012 19:47:46 -0500
parents be94ae8dac28
children f521f05bc6f5
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
1 <?xml version="1.0"?>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
2 <tool_dependency>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
3 <package name="bedtools" version="2.17.0">
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
4 <install version="1.0">
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
5 <actions>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
6 <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
7 <action type="shell_command">tar -zxvf BEDTools.v2.17.0.tar.gz </action>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
8 <action type="shell_command">cd BEDTools.v2.17.0</action>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
9 <action type="shell_command">make clean</action>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
10 <action type="shell_command">make all</action>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
11 <action type="shell_command">cp bin/* $INSTALL_DIR/bin</action>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
12
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
13 <action type="set_environment">
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
15 </action>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
16 </actions>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
17 </install>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
18 <readme>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
19 GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
20 </readme>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
21 </package>
be94ae8dac28 Uploaded
fcaramia
parents:
diff changeset
22 </tool_dependency>