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annotate tool_dependencies.xml @ 5:be94ae8dac28

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author fcaramia
date Sun, 02 Dec 2012 19:44:11 -0500
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children f521f05bc6f5
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bedtools" version="2.17.0">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
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7 <action type="shell_command">tar -zxvf BEDTools.v2.17.0.tar.gz </action>
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8 <action type="shell_command">cd BEDTools.v2.17.0</action>
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9 <action type="shell_command">make clean</action>
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10 <action type="shell_command">make all</action>
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11 <action type="shell_command">cp bin/* $INSTALL_DIR/bin</action>
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12
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools
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20 </readme>
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21 </package>
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22 </tool_dependency>