Mercurial > repos > fcaramia > contra

comparison tool_dependencies.xml @ 12:d63052c0d852

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Uploaded
author fcaramia
date Sun, 02 Dec 2012 23:10:12 -0500
parents be94ae8dac28
children f521f05bc6f5
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11:b6ce842a633d 12:d63052c0d852
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="bedtools" version="2.17.0">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
7 <action type="shell_command">tar -zxvf BEDTools.v2.17.0.tar.gz </action>
8 <action type="shell_command">cd BEDTools.v2.17.0</action>
9 <action type="shell_command">make clean</action>
10 <action type="shell_command">make all</action>
11 <action type="shell_command">cp bin/* $INSTALL_DIR/bin</action>
12
13 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
15 </action>
16 </actions>
17 </install>
18 <readme>
19 GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools
20 </readme>
21 </package>
22 </tool_dependency>