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comparison tool_dependencies.xml @ 13:f521f05bc6f5

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Uploaded
author fcaramia
date Tue, 04 Dec 2012 23:25:00 -0500
parents be94ae8dac28
children 2f78991873a4
comparison
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12:d63052c0d852 13:f521f05bc6f5
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="bedtools" version="2.17.0"> 3 <package name="bedtools" version="2.17.0">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action> 6 <action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
7 <action type="shell_command">tar -zxvf BEDTools.v2.17.0.tar.gz </action> 7 <action type="shell_command">tar -zxvf bedtools-2.17.0.tar.gz </action>
8 <action type="shell_command">cd BEDTools.v2.17.0</action> 8 <action type="shell_command">cd bedtools-2.17.0</action>
9 <action type="shell_command">make clean</action> 9 <action type="shell_command">make clean</action>
10 <action type="shell_command">make all</action> 10 <action type="shell_command">make all</action>
11 <action type="shell_command">cp bin/* $INSTALL_DIR/bin</action> 11 <action type="move_directory_files">
12 12 <source_directory>bin</source_directory>
13 <action type="set_environment"> 13 <destination_directory>$INSTALL_DIR/bin</destination_directory>
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 14 </action>
15 </action> 15 <action type="set_environment">
16 </actions> 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
17 </install> 17 </action>
18 <readme> 18 </actions>
19 </install>
20 <readme>
19 GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools 21 GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools
20 </readme> 22 </readme>
21 </package> 23 </package>
22 </tool_dependency> 24 </tool_dependency>
25