<?xml version="1.0"?>
<tool_dependency>
   <package name="bedtools" version="2.17.0">
       <install version="1.0">
           <actions>
		<action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
		<action type="shell_command">tar -zxvf bedtools-2.17.0.tar.gz </action>
		<action type="shell_command">cd bedtools-2.17.0</action>
		<action type="shell_command">make clean</action>
		<action type="shell_command">make all</action>
		<action type="move_directory_files">
			<source_directory>bin</source_directory>
			<destination_directory>$INSTALL_DIR/bin</destination_directory>
		</action>
		<action type="set_environment">
		   <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
		</action>
           </actions>
       </install>
       <readme>
GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools
       </readme>
   </package>
</tool_dependency>