# HG changeset patch
# User fcaramia
# Date 1354507796 18000
# Node ID b6ce842a633dcc36926422c6421a0a6e6aa95e67
# Parent  6a3c6e45dd4ee436d3d93c1732a925164449d93b
Deleted selected files

diff -r 6a3c6e45dd4e -r b6ce842a633d tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Dec 02 20:32:42 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="bedtools" version="2.17.0">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
-                <action type="shell_command">tar -zxvf BEDTools.v2.17.0.tar.gz </action>
-                <action type="shell_command">cd BEDTools.v2.17.0</action>
-                <action type="shell_command">make clean</action>
-                <action type="shell_command">make all</action>
-                <action type="shell_command">cp bin/* $INSTALL_DIR/bin</action>
-                
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools
-        </readme>
-    </package>
-</tool_dependency>