--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/alignCustomAmplicon/all_fasta.loc.sample	Wed Jan 09 00:24:09 2013 -0500
@@ -0,0 +1,18 @@
+#This file lists the locations and dbkeys of all the fasta files
+#under the "genome" directory (a directory that contains a directory
+#for each build). The script extract_fasta.py will generate the file
+#all_fasta.loc. This file has the format (white space characters are
+#TAB characters):
+#
+#<unique_build_id>   <dbkey>   <display_name>   <file_path>
+#
+#So, all_fasta.loc could look something like this:
+#
+#apiMel3     apiMel3   Honeybee (Apis mellifera): apiMel3     /path/to/genome/apiMel3/apiMel3.fa
+#hg19canon   hg19      Human (Homo sapiens): hg19 Canonical   /path/to/genome/hg19/hg19canon.fa
+#hg19full    hg19      Human (Homo sapiens): hg19 Full        /path/to/genome/hg19/hg19full.fa
+#
+#Your all_fasta.loc file should contain an entry for each individual
+#fasta file. So there will be multiple fasta files for each build,
+#such as with hg19 above.
+#