Mercurial > repos > fcaramia > custom_amplicon_alignment

diff alignCustomAmplicon/tool_dependencies.xml @ 0:d32bddcff685 draft

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author fcaramia
date Wed, 09 Jan 2013 00:24:09 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/alignCustomAmplicon/tool_dependencies.xml	Wed Jan 09 00:24:09 2013 -0500
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="picard" version="1.56.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action>
+                <action type="move_directory_files">
+                    <source_directory>picard-tools-1.56</source_directory>
+                    <destination_directory>$INSTALL_DIR/jars</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>