# HG changeset patch # User fcaramia # Date 1357709273 18000 # Node ID 6a1b222df393b6f2773f044980230fe1d3e46b28 # Parent d32bddcff685dc0c328182f9635bf67e0b7e897e Uploaded diff -r d32bddcff685 -r 6a1b222df393 alignCustomAmplicon/alignCustomAmplicon_wrapper.xml --- a/alignCustomAmplicon/alignCustomAmplicon_wrapper.xml Wed Jan 09 00:24:09 2013 -0500 +++ b/alignCustomAmplicon/alignCustomAmplicon_wrapper.xml Wed Jan 09 00:27:53 2013 -0500 @@ -1,9 +1,11 @@ align amplicon to reference with primers - picard - samtools - gzip - Inline-CPP + + picard + samtools + gzip + Inline-CPP + alignCustomAmplicon.pl -s -r -p 4 -o $output $refFile.fields.path $read1 $read2 $primers