Mercurial > repos > fcaramia > edger
comparison htseq.xml @ 9:17983775f1b0 draft
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author | fcaramia |
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date | Mon, 28 Jan 2013 20:12:15 -0500 |
parents | 734516a21b52 |
children |
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8:734516a21b52 | 9:17983775f1b0 |
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1 <tool id="htseq-count" name="Count reads in features with htseq-count" version="1.0.0"> | 1 <tool id="htseq-count" name="Count reads in features with htseq-count" version="1.0.0"> |
2 <requirements> | |
3 <requirement type="package" version="0.1.18">samtools</requirement> | |
4 <requirement type="python library" version="0.5.3p9">htseq</requirement> | |
5 </requirements> | |
2 <description> - Create a digital expression matrix by counting reads in features with htseq-count</description> | 6 <description> - Create a digital expression matrix by counting reads in features with htseq-count</description> |
3 <command interpreter="perl"> | 7 <command interpreter="perl"> |
4 htseq.pl -m $MODE -s $STRANDED -a $MINAQUAL -t $FEATURETYPE -i $IDATTR -g $gff_file -o $output -r $report $REDUCE | 8 htseq.pl -m $MODE -s $STRANDED -a $MINAQUAL -t $FEATURETYPE -i $IDATTR -g $gff_file -o $output -r $report $REDUCE |
5 ## Inputs. | 9 ## Inputs. |
6 #for $group in $group_analysis | 10 #for $group in $group_analysis |