# HG changeset patch # User fcaramia # Date 1359421935 18000 # Node ID 17983775f1b088c11113fbf9f2cf180ed3e66642 # Parent 734516a21b5220c5291fe11478a55038a71ff358 Uploaded diff -r 734516a21b52 -r 17983775f1b0 htseq.xml --- a/htseq.xml Thu Sep 13 00:51:13 2012 -0400 +++ b/htseq.xml Mon Jan 28 20:12:15 2013 -0500 @@ -1,4 +1,8 @@ + + samtools + htseq + - Create a digital expression matrix by counting reads in features with htseq-count htseq.pl -m $MODE -s $STRANDED -a $MINAQUAL -t $FEATURETYPE -i $IDATTR -g $gff_file -o $output -r $report $REDUCE