Mercurial > repos > fcaramia > edger

changeset 7:3aadcea3347b draft

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Uploaded
author fcaramia
date Thu, 13 Sep 2012 00:50:59 -0400
parents b6de7e3b8239
children 734516a21b52
files edgeR.xml
diffstat 1 files changed, 3 insertions(+), 0 deletions(-) [+]
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line diff
--- a/edgeR.xml	Thu Sep 13 00:06:26 2012 -0400
+++ b/edgeR.xml	Thu Sep 13 00:50:59 2012 -0400
@@ -1,4 +1,5 @@
 <tool id="edgeR" name="Empirical analysis of digital gene expression data" version="0.0.1">
+  <description> - Estimates differential gene expression for short read sequence count using methods appropriate for count data</description>
   <requirements>
         <requirement type="R-module">edgeR</requirement>
         <requirement type="R-module">limma</requirement>
@@ -159,6 +160,7 @@
 edgeR_ requires biological replicates. 
 Without replicates you can't account for known important experimental sources of variability that the approach implemented here requires.
 
+
 **Input**
 A count matrix containing sequence names as rows and sample specific counts of reads from this sequence as columns.
 The matrix must have 2 header rows, the first indicating the group assignment and the second uniquely identifiying the samples. It must also contain a unique set of (eg Feature) names in the first column. 
@@ -208,6 +210,7 @@
  .. _edgeR: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
  .. _limma: http://www.bioconductor.org/packages/release/bioc/html/limma.html
 
+
 	</help>
   
 </tool>