Mercurial > repos > fcaramia > jointsnvmix

comparison jsm_to_vcf.xml @ 0:a1034918ab9b draft

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author fcaramia
date Thu, 20 Jun 2013 00:03:08 -0400
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1 <tool id="jsm_to_vcf" name="Convert JSM to VCF" version="1.0">
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3 <command interpreter="perl">
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5 jsm_to_vcf.pl $input $output
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7 </command>
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9 <inputs>
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11 <param name="input" type="data" format="txt" label="JSM File" optional="false"/>
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13 </inputs>
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15 <outputs>
16 <data type="data" format="vcf" name="output" label="${tool.name} result on ${on_string}"/>
17 </outputs>
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19 <help>
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21 .. class:: infomark
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23 **What it does**
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25 Convert Joint SNV Mix output file into standard VCF format, version 4.1
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27
28 **Input**
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30 Coverage:
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32 JSM output file
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35 </help>
36 </tool>
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