# HG changeset patch
# User fcaramia
# Date 1354577241 18000
# Node ID 4f09ae8138d115b986e7e3d905aa09c2148d4446
# Parent  23fed0cf09f4f8cbad46ccb8e148896c98570322
Uploaded

diff -r 23fed0cf09f4 -r 4f09ae8138d1 bismark_indices.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bismark_indices.loc.sample	Mon Dec 03 18:27:21 2012 -0500
@@ -0,0 +1,7 @@
+
+# Genomes have been coverted using bismark_genome_preparation script. Index points to the directory containing the genome and the methylated genome folder
+
+#bismark.hg19.GRCh37.62	hg19	hg19 ensembl GRCh37.62	/galaxy/indexes/human/ensembl_GRCh37.62/bowtie2/illumina/
+#bismark.hg19.b37	b37	hg19 1000 genomes b37	/galaxy/indexes/human/g1k_v37/bowtie2/illumina/
+#bismark.mm9.NCBIM37.62	 mm9	mm9 ensembl NCBIM37.62	/galaxy/indexes/mouse/ensembl_NCBIM37.62/bowtie2/illumina/
+#bismark.dm3.BDGP5.25.62	dm3	dm3 ensembl BDGP5.25.62	/galaxy/indexes/fruitfly/ensembl_BDGP5.25.62/bowtie2/illumina/