diff interpro/INSTALL.txt @ 0:c342ebb50f0b draft default tip

Uploaded
author fernando
date Thu, 22 May 2014 05:09:07 -0400
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+DEPENDENCES
+
+The wrapper needs BioPerl and InterProScan and it runs on a linux system.
+
+To install BioPerl:
+http://www.bioperl.org/wiki/Installing_BioPerl
+
+To install InterProScan:
+http://code.google.com/p/interproscan/wiki/HowToDownload
+
+
+
+## INSTALLATION WRAPPER INSTRUCTIONS
+
+# Stop your local Galaxy
+
+# Change to your_galaxy_path/tools  
+	> cd your_galaxy_path/tools
+
+# Uncompress tar.gz file into "tools" directory.
+	> tar -xvfz interpro.tar.gz
+
+# Edit "paso3.sh" file and change InterProScan path to your local InterProScan path.
+
+# Go to the root galaxy directory, edit "tool_conf.xml" and insert this code block in the site where you would like to see the tool on the toolbar:
+
+  <section id="LaGiFer" name="Protein Functional Analysis Similarities">
+    <tool file="interpro/paso1.xml" />
+    <tool file="interpro/paso2.xml" />
+    <tool file="interpro/paso3.xml" />
+    <tool file="interpro/paso4.xml" />
+  </section>
+
+
+# Run your Galaxy
+	> ./run.sh
+
+## INSTALLATION WORKFLOW INSTRUCTIONS
+
+# To install the workflow to run these tools, press "Upload or import workflow" from workflow menu, then select the .ga file through the "browse" (examinar) bottom and import it.
+
+Select "Configure your workflow menu" and click on "Show in menu" item and press "send".
+
+
+
+Thank you very much for using our Protein "Functional Analysis Similarities" wrapper
+
+For additional details or reporting errors please contact us.
+
+
+gines.a@hotmail.com
+fernando.perez8@um.es
+lentram@um.es
+
+