--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/interpro/paso1.xml	Thu May 22 05:09:07 2014 -0400
@@ -0,0 +1,107 @@
+<tool id="ALaGiFer_1" name="RemoteBlast" version="1.0.0">
+    <description>Blast against UniProt/SwissProt database</description>
+    <command interpreter="perl">
+    paso1.pl $infile $outfile
+    </command>
+
+        <inputs>
+            <param name="infile" type="data" format="fasta" label="Sequence in Fasta File"/>
+
+          
+           </inputs>
+<outputs>
+<data format="txt" name="outfile"/>
+</outputs>
+
+<stdio><exit_code range="1:" level="fatal" description="Error" /></stdio>
+    <help>
+
+**What it does**
+
+This tool runs a remote blast against Uniprot/Swissprot database.
+
+
+**Dependencies**
+
+Bioperl is necessary for running this tool.
+
+#####
+Input
+#####
+
+Required is a FASTA file containing protein sequences.
+
+
+######
+Output
+######
+
+Generates an output text file.
+
+
+Example Output
+--------------
+BLASTP 2.2.29+
+Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
+A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
+David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
+generation of protein database search programs", Nucleic
+Acids Res. 25:3389-3402.
+
+
+RID: M2E3HVH4014
+
+
+Database: Non-redundant UniProtKB/SwissProt sequences
+           457,803 sequences; 170,956,615 total letters
+Query= C08B11.6 CE30856 WBGene00007434  actin   status:Confirmed       
+UniProt:Q09443  protein_id:CAA86667.3
+
+Length=418
+
+
+                                                                   Score     E
+Sequences producing significant alignments:                       (Bits)  Value
+
+sp|Q09443.3|ARP6_CAEEL  RecName: Full=Actin-like protein C08B11.6    853   0.0  
+sp|Q9D864.2|ARP6_MOUSE  RecName: Full=Actin-related protein 6;...    280   2e-88
+sp|Q9GZN1.1|ARP6_HUMAN  RecName: Full=Actin-related protein 6;...    279   5e-88
+sp|Q9DEE9.1|ARP6_CHICK  RecName: Full=Actin-related protein 6;...    274   5e-86
+sp|P45890.1|ARP6_DROME  RecName: Full=Actin-related protein 6;...    265   1e-82
+sp|Q6C982.1|ARP6_YARLI  RecName: Full=Actin-like protein ARP6        232   4e-70
+sp|O94241.1|ARP6_SCHPO  RecName: Full=Actin-like protein arp6        228   2e-68
+sp|Q7S6X6.1|ARP6_NEUCR  RecName: Full=Actin-related protein 6        212   6e-62
+sp|Q5NBI2.1|ARP6_ORYSJ  RecName: Full=Actin-related protein 6 ...    210   3e-61
+
+ALIGNMENTS
+>sp|Q09443.3|ARP6_CAEEL RecName: Full=Actin-like protein C08B11.6
+Length=418
+
+ Score =   853 bits (2204),  Expect = 0.0
+ Identities = 418/418 (100%), Positives = 418/418 (100%), Gaps = 0/418 (0%)
+
+Query  1    MSLTTIIFDNGGHNMKIGTIDSESPRLVPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYV  60
+            MSLTTIIFDNGGHNMKIGTIDSESPRLVPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYV
+Sbjct  1    MSLTTIIFDNGGHNMKIGTIDSESPRLVPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYV  60
+
+Query  61   RPIERGYVVNWDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGF  120
+            RPIERGYVVNWDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGF
+Sbjct  61   RPIERGYVVNWDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGF  120
+
+Query  121  TEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKAL  180
+            TEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKAL
+Sbjct  121  TEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKAL  180
+
+Query  181  TNKLKDWVSYRQLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPD  240
+            TNKLKDWVSYRQLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPD
+Sbjct  181  TNKLKDWVSYRQLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPD  240
+
+
+**Galaxy Wrapper Authors**::
+
+    * Laura Entrambasaguas
+    * Ginés Almagro
+    * Fernando Pérez
+
+    </help>
+</tool>