annotate _README.txt @ 0:7c9269bded0e draft

Init repository for [downloader_bank_hmdb]
author fgiacomoni
date Tue, 14 Jan 2020 05:21:23 -0500
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1 ## ****** downloader_bank_hmdb environnemnt : ****** ##
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2 # version 21/11/ 2018 / F Giacomoni
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3
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4 ## --- PERL compilator / libraries : --- ##
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5 $ perl -v
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6 This is perl 5, version 18, subversion 2 (v5.18.2) built for darwin-thread-multi-2level
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7
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8 # libs CORE PERL :
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9 use strict ;
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10 use warnings ;
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11 use Carp qw (cluck croak carp) ;
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12 use Exporter ;
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13 use Data::Dumper ;
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14 use Getopt::Long ;
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15 use FindBin ;
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16
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17 # libs CPAN PERL :
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18 $ perl -e 'use XX::XX'
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19 $ sudo perl -MCPAN -e shell
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20 cpan> install XX::XX
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21
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22 # libs pfem PERL :
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23 No dependency with pfem lib
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24 --
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25
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26 ## --- R bin and Packages : --- ##
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27
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28 No interaction with R
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29 --
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30
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31 ## --- Binary dependencies --- ##
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32 Install folowing binaries : N/A
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33 --
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34
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35 ## --- Config : --- ##
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36 Edit the config file : /path/*.conf
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37
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38 --
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39
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40 ## --- XML HELP PART --- ##
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41 Copy the following images in ~/static/images/metabolomics :
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42 --
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43
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44 ## --- DATASETS --- ##
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45 --
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46
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47 ## --- ??? COMMENTS ??? --- ##
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48 --