--- a/downloader_bank_hmdb.xml	Tue Jan 21 16:09:45 2020 -0500
+++ b/downloader_bank_hmdb.xml	Wed Nov 30 16:14:27 2022 +0000
@@ -1,12 +1,13 @@
-<tool id="downloader_bank_hmdb" name="HMDB bank downloader" version="2018.12">
+<tool id="downloader_bank_hmdb" name="Wishart bank downloader" version="1.1.2">
   <description>
-        : get a specific metabolite bank (as Urine...) from HMDB web portal.
+        : get a specific metabolite bank (as Urine, Serum...) from Wishart web portal.
   </description>
   
   <requirements>
       <requirement type="package" version="2.161">perl-data-dumper</requirement>
       <requirement type="package" version="6.15">perl-lwp-simple</requirement>
 	  <requirement type="package" version="6.15">perl-libwww-perl</requirement>
+	  <requirement type="package" version="6.07">perl-lwp-protocol-https</requirement>
       <requirement type="package" version="1.74">perl-uri</requirement>
       <requirement type="package" version="1.97">perl-text-csv</requirement>
       <requirement type="package" version="3.52">perl-xml-twig</requirement>
@@ -28,15 +29,16 @@
         
   ]]></command>
   <inputs>
-  	<param name="bank" type="select" label="What is the specific bank you want to download? " help="All banks are extracted from downloads section on HMDB web portal.">
+  	<param name="bank" type="select" label="What is the specific bank you want to download? " help="All banks are extracted from downloads section on Whishart web portals.">
         <option value="SERUM" selected="true">Human serum</option>
         <option value="URINE">Human urine</option>
+        <option value="SWEAT">Human sweat</option>
         <option value="CSF">Human cerebrospinal fluid</option>
         <option value="FECES">Human feces</option>
         <option value="SALIVA">Human saliva</option>
         <option value="COW">Bovine</option>
-        <option value="RUMEN">Bovine rumen</option>
         <option value="MILK">Bovine milk</option>
+        <option value="TOXIC">Toxin and Toxin Target Database</option>
     </param>
     <param name="bankformat" type="select" label="Which output format do you need? " help="Proposed formats are lighter than downloaded raw files and adapted to annotation tools.">
         <option value="tabular" selected="true">tabular (for BiH tool)</option>
@@ -67,14 +69,14 @@
 
 .. class:: infomark
 
-**Authors** Charlotte Joly, Delphine Centeno and Franck Giacomoni
+**Authors** Charlotte Joly, Delphine Centeno, Lain Pavot, Yann Guitton and Franck Giacomoni
 
 ---------------------------------------------------
 
 .. class:: infomark
 
 **Please cite** If you use this tool, please add the following reference
-  | Wishart DS, Feunang YD, Marcu A, Guo AC, Liang K, et al., HMDB 4.0 — The Human Metabolome Database for 2018. Nucleic Acids Res. 2018. Jan 4;46(D1):D608-17.
+  | Wishart DS, Guo AC, Oler E, et al., HMDB 5.0: the Human Metabolome Database for 2022. Nucleic Acids Res. 2022. Jan 7;50(D1):D622–31.
 
 
 ---------------------------------------------------
@@ -128,8 +130,6 @@
 
 Two types of files
 	| REF_HMDB_BANKNAME.tabular: for W4M BiH annotation tool as example
-	| 
-	| REF_HMDB_BANKNAME.json: for linking with others modules.
 	|
 	
 ---------------------------------------------------
@@ -148,7 +148,7 @@
 
 .. class:: warningmark
 
-And their "W4M courses 2018":
+And their "W4M courses 2020":
  | Using Galaxy4Metabolomics - W4M table format for Galaxy
  | Annotation Banks - Annotation  
 	
@@ -157,5 +157,7 @@
 	<!-- [RECOMMANDED] All citations associated to this tool (main citation given above and other references). Can be extracted from the history panel -->
   <citations>
     <citation type="doi">10.1093/nar/gkx1089</citation>
+    <citation type="doi">10.1093/nar/gku1004</citation>
+    <citation type="doi">10.1093/nar/gkab1062</citation>
   </citations>
 </tool>
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