Mercurial > repos > fgiacomoni > downloader_bank_hmdb
view conf.cfg @ 1:4373f936111d draft
" master branch Updating with tag :CI_COMMIT_TAG - - Fxx"
author | fgiacomoni |
---|---|
date | Tue, 21 Jan 2020 16:09:45 -0500 |
parents | 7c9269bded0e |
children | be504ccbc41c |
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## Conf file for downloader_bank_hmdb.pl script # ## Version VERSION=1.1 ##v1.0 : Init ##V1.1 : calculating and adding [M+H]+ and [M-H]- mono isotopic mass in banks # ## ARGVT PROTON_MASS=1.007825 ELECTRON_MASS=0.0005486 #CHARGE=1 #LOCAL BANKS VERSIONNING LOCALBANK_PATH=banks #HMDB archive url HMDB_URL= ## Serum SERUM_URL=http://www.hmdb.ca/system/downloads/current/serum_metabolites.zip SERUM_FILE_NAME=serum_metabolites.xml SERUM_HTTP_FORMAT=ZIP SERUM_DB_FORMAT=XML ## Urine URINE_URL=http://www.hmdb.ca/system/downloads/current/urine_metabolites.zip URINE_FILE_NAME=urine_metabolites.xml URINE_HTTP_FORMAT=ZIP URINE_DB_FORMAT=XML ## Other matrices: ## CSF CSF_URL=http://www.hmdb.ca/system/downloads/current/csf_metabolites.zip CSF_FILE_NAME=csf_metabolites.xml CSF_HTTP_FORMAT=ZIP CSF_DB_FORMAT=XML ##FECES FECES_URL=http://www.fecalmetabolome.ca/system/downloads/current/feces_metabolites.zip FECES_FILE_NAME=feces_metabolites.xml FECES_HTTP_FORMAT=ZIP FECES_DB_FORMAT=XML ##SALIVA SALIVA_URL=http://www.salivametabolome.ca/system/downloads/current/saliva_metabolites.zip SALIVA_FILE_NAME=saliva_metabolites.xml SALIVA_HTTP_FORMAT=ZIP SALIVA_DB_FORMAT=XML ##RUMEN RUMEN_URL=http://www.rumendb.ca/public/downloads/current/metabocards.gz RUMEN_FILE_NAME=metabocards RUMEN_HTTP_FORMAT=GZ RUMEN_DB_FORMAT=CARD ##COW COW_URL=http://www.cowmetdb.ca/public/downloads/current/metabocards.gz COW_FILE_NAME=metabocards COW_HTTP_FORMAT=GZ COW_DB_FORMAT=CARD ##MILK MILK_URL=http://www.mcdb.ca/system/downloads/current/milk_metabolites.zip MILK_FILE_NAME=milk_metabolites.xml MILK_HTTP_FORMAT=ZIP MILK_DB_FORMAT=XML