Mercurial > repos > fgiacomoni > golm_ws_lib_search
diff lib/golm_ws_api.pm @ 2:11779b6402bc draft
planemo upload for repository https://github.com/workflow4metabolomics/tool-bank-golm-lib_search.git commit a2892b221abe5a68ef271266a36b66894fcf9bde
author | fgiacomoni |
---|---|
date | Wed, 22 Feb 2017 07:37:36 -0500 |
parents | e3d43b8c987b |
children |
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--- a/lib/golm_ws_api.pm Mon Dec 05 08:41:00 2016 -0500 +++ b/lib/golm_ws_api.pm Wed Feb 22 07:37:36 2017 -0500 @@ -200,7 +200,7 @@ ## Limitate number of hits returned according to user's $maxHit ## and filter hits on specific values with thresholds my @results = @$results ; - + ### Return all hits my $oapi = lib::golm_ws_api->new() ; if ($maxHits == 100 && $status eq 'success') { @@ -235,7 +235,7 @@ } else { carp "The spectrum for query is undef, Golm soap will stop.\n" ; } - return \@filtered_limited_res ; +# return \@filtered_limited_res ; } ### END of SUB @@ -261,12 +261,25 @@ my @results = @$results ; my @filtered_res = () ; + ## Adjust threshold + $JaccardDistanceThreshold = sprintf("%.6f", $JaccardDistanceThreshold) ; + $s12GowerLegendreDistanceThreshold = sprintf("%.6f", $s12GowerLegendreDistanceThreshold) ; + $DotproductDistanceThreshold = sprintf("%.6f", $DotproductDistanceThreshold) ; +# $HammingDistanceThreshold = sprintf("%.6f", $HammingDistanceThreshold); + $EuclideanDistanceThreshold = sprintf("%.6f", $EuclideanDistanceThreshold); + foreach my $res (@results){ + + $res->{'JaccardDistance'} = sprintf("%.6f", $res->{'JaccardDistance'}) ; + $res->{'s12GowerLegendreDistance'} = sprintf("%.6f", $res->{'s12GowerLegendreDistance'}) ; + $res->{'DotproductDistance'} = sprintf("%.6f", $res->{'DotproductDistance'}) ; +# $res->{'HammingDistance'} = sprintf("%.6f", $res->{'HammingDistance'}) ; + $res->{'EuclideanDistance'} = sprintf("%.6f", $res->{'EuclideanDistance'}) ; if ($res->{'JaccardDistance'} <= $JaccardDistanceThreshold && $res->{'s12GowerLegendreDistance'} <= $s12GowerLegendreDistanceThreshold - && $res->{'DotproductDistance' } <= $DotproductDistanceThreshold && $res->{'HammingDistance'} <= $HammingDistanceThreshold && - $res->{'EuclideanDistance' } <= $EuclideanDistanceThreshold) { - + && $res->{'DotproductDistance'} <= $DotproductDistanceThreshold && $res->{'HammingDistance'} <= $HammingDistanceThreshold && + $res->{'EuclideanDistance'} <= $EuclideanDistanceThreshold) { + push (@filtered_res , $res) ; } }