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author fgiacomoni
date Tue, 02 Oct 2018 04:42:27 -0400
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1 HMDB MS search - search by masses on HMDB online bank
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2 =====================================================
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4 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-hmdb.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-hmdb)
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6 Our project
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7 -----------
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8 The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
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11 HMDB MS search - search by masses on HMDB online bank
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12 -----------------------------------------------------
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14 Tool using the HMDB Library Search.
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17 Galaxy
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18 ------
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19 Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
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21 Homepage: [https://galaxyproject.org/](https://galaxyproject.org/)
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24 Dependencies using Conda
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25 ------------------------
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26 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io)
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29 [Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages.
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31 ```
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32 #To install miniconda2
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33 #http://conda.pydata.org/miniconda.html
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34 #To install the tool dependencies using conda:
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35 conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template
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36 #To set an environment:
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37 conda create -n tool-bank-hmdb perl-soap-lite perl-list-moreutils perl-json perl-html-template`
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38 #To activate the environment:
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39 . activate tool-bank-hmdb
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40 ```
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43 Travis
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44 ------
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45 [![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-hmdb.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-hmdb)
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47 Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
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49 Historic contributors
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50 ---------------------
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51 - Franck Giacomoni @fgiacomoni - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)
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52 - Marion Landi - [LIFEGRID grant](http://www.lifegrid.fr/fr/home/le-pra-lifegrid.html) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)