Mercurial > repos > fgiacomoni > hmdb_ms_search

comparison wsdl_hmdb.pl @ 4:6091a80df951 draft

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planemo upload commit e2dfb6f7afeeb7767ef83e9e2c3a2d3e6a94ae98
author fgiacomoni
date Fri, 19 Jan 2018 09:38:17 -0500
parents 6d0a0f8f672a
children 97788e4bf3fc
comparison
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3:505956db90c5 4:6091a80df951
212 sub help { 212 sub help {
213 print STDERR " 213 print STDERR "
214 help of wsdl_hmdb 214 help of wsdl_hmdb
215 215
216 # wsdl_hmdb is a script to query HMDB website using mz and return a list of candidates sent by HMDB based on the ms search tool. 216 # wsdl_hmdb is a script to query HMDB website using mz and return a list of candidates sent by HMDB based on the ms search tool.
217 # Input : formula or list of formula 217 # Input : accurate mz or list of accurate masses
218 # Author : Franck Giacomoni and Marion Landi 218 # Author : Franck Giacomoni and Marion Landi
219 # Email : fgiacomoni\@clermont.inra.fr 219 # Email : fgiacomoni\@inra.fr
220 # Version : 1.4 220 # Version : 1.5
221 # Created : 08/07/2012 221 # Created : 08/07/2012
222 # Updated : 21/01/2016 222 # Updated : 19/01/2018
223 USAGE : 223 USAGE :
224 wsdl_hmdb.pl -mass [one mass or a string list of exact masses] -delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file] 224 wsdl_hmdb.pl -mass [one mass or a string list of exact masses] -delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file]
225 225
226 or 226 or
227 wsdl_hmdb.pl -masses [an input file of mzs] -colfactor [col of mz] -header_choice [yes|no] -nblineheader [nb of lines containing file header : 0-n] 227 wsdl_hmdb.pl -masses [an input file of mzs] -colfactor [col of mz] -header_choice [yes|no] -nblineheader [nb of lines containing file header : 0-n]
266 266
267 =back 267 =back
268 268
269 =head1 AUTHOR 269 =head1 AUTHOR
270 270
271 Franck Giacomoni E<lt>franck.giacomoni@clermont.inra.frE<gt> 271 Franck Giacomoni E<lt>franck.giacomoni@inra.frE<gt>
272 272
273 =head1 LICENSE 273 =head1 LICENSE
274 274
275 This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. 275 This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
276 276
282 282
283 version 1.3 : 19 / 11 / 2014 283 version 1.3 : 19 / 11 / 2014
284 284
285 version 1.4 : 21 / 01 / 2016 - a clean version for community 285 version 1.4 : 21 / 01 / 2016 - a clean version for community
286 286
287 version 1.5 : 19 / 01 / 2018 - modifiy parser to match HMDB V4.0 formats
288
287 =cut 289 =cut