Mercurial > repos > fgiacomoni > hmdb_ms_search
diff Dockerfile @ 22:453fbe98925a draft
" master branch Updating with tag :CI_COMMIT_TAG - - Fxx"
author | fgiacomoni |
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date | Fri, 20 Nov 2020 17:29:18 +0000 |
parents | |
children | 8f7546d0b925 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Dockerfile Fri Nov 20 17:29:18 2020 +0000 @@ -0,0 +1,53 @@ +# ref install: ubuntu 20.04 +FROM ubuntu:20.04 + +# init var +ARG DEBIAN_FRONTEND=noninteractive + +# set author +MAINTAINER Franck Giacomoni <franck.giacomoni.fr> + +### +### [CONTAINER CORE FUNCTIONS]: +### xxxx +### xxxx +### [NOTES] +### xxxx + +ENV PATH /opt/conda/bin:$PATH + +RUN apt-get -y update &&\ + apt-get -y install build-essential \ + cpanminus \ + gzip \ + wget \ + bzip2 \ + ca-certificates \ + libglib2.0-0 \ + libxext6 \ + libsm6 \ + libxrender1 \ + libtext-csv-perl \ + libxml-twig-perl \ + libfile-share-perl + +RUN wget --quiet https://repo.anaconda.com/archive/Anaconda3-5.3.0-Linux-x86_64.sh -O ~/anaconda.sh && \ + /bin/bash ~/anaconda.sh -b -p /opt/conda && \ + rm ~/anaconda.sh && \ + ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \ + echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \ + echo "conda activate base" >> ~/.bashrc + +RUN cpan install ExtUtils::MakeMaker && \ + cpan install File::ShareDir::Install && \ + cpan install Module::Release && \ + cpan install Archive::Zip && \ + apt -y install git &&\ + apt -y install python3 python3-pip && \ + apt -y install virtualenv && \ + pip install "pip>=7" && \ + pip install -U git+git://github.com/galaxyproject/planemo.git && \ + apt-get autoremove -y && \ + apt-get clean && \ + rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* +