Mercurial > repos > fgiacomoni > hmdb_ms_search
diff wsdl_hmdb.xml @ 14:625fa968d99a draft
Master branch Updating - - Fxx
author | fgiacomoni |
---|---|
date | Thu, 10 Jan 2019 09:10:14 -0500 |
parents | 3587cb923890 |
children | beb9619263b0 |
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--- a/wsdl_hmdb.xml Tue Oct 02 04:59:13 2018 -0400 +++ b/wsdl_hmdb.xml Thu Jan 10 09:10:14 2019 -0500 @@ -1,6 +1,6 @@ <tool id="wsdl_hmdb" name="HMDB MS search" version="2018-10-01"> <description> - search by masses on HMDB online bank + search by masses on HMDB online LCMS bank </description> <requirements> @@ -92,9 +92,9 @@ </outputs> <tests> -<!-- + <!--test 01 no result - fake-mzrt-input-with-id --> + <!-- <test> - <!~~test 01 no result - fake-mzrt-input-with-id ~~> <param name="choice" value="YES"/> <param name="masses" value="input_test01_fake-mzrt-input-with-id.tabular"/> <param name="header_choice" value="yes"/> @@ -107,8 +107,10 @@ <output name="HmdbOutWeb" file="out_test01.html"/> <output name="HmdbOutXlsx" file="out_test01.txt"/> </test> + --> + <!--test 02 : some results - with-mzrt-input-with-id file--> + <!-- <test> - <!~~test 02 : some results - with-mzrt-input-with-id file~~> <param name="choice" value="YES"/> <param name="masses" value="input_test02_mzrt-input-with-id.tabular"/> <param name="header_choice" value="yes"/> @@ -121,9 +123,9 @@ <output name="HmdbOutWeb" file="out_test02.html"/> <output name="HmdbOutXlsx" file="out_test02.txt"/> </test> - --> + --> + <!--test 03 : some results - with-mz list in manual mass mode--> <test> - <!--test 03 : some results - with-mz list in manual mass mode--> <param name="choice" value="NO"/> <param name="mass" value="175.01 238.19 420.16 780.32 956.25 1100.45"/> <param name="delta" value="0.05"/> @@ -147,6 +149,7 @@ **Please cite** If you use this tool, please add the following reference | Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, et al., HMDB 3.0 — The Human Metabolome Database in 2013. Nucleic Acids Res. 2013. + | Wishart DS, Feunang YD, Marcu A, Guo AC, Liang K, et al., HMDB 4.0 — The Human Metabolome Database for 2018. Nucleic Acids Res. 2018. --------------------------------------------------- @@ -271,7 +274,7 @@ .. class:: warningmark -And their "W4M courses 2015": +And their "W4M courses 2018": | Using Galaxy4Metabolomics - W4M table format for Galaxy | Annotation Banks - Annotation @@ -280,5 +283,6 @@ <!-- [RECOMMANDED] All citations associated to this tool (main citation given above and other references). Can be extracted from the history panel --> <citations> <citation type="doi">10.1093/nar/gks1065</citation> + <citation type="doi">10.1093/nar/gkx1089</citation> </citations> </tool> \ No newline at end of file