Mercurial > repos > fgiacomoni > hmdb_ms_search
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author | fgiacomoni |
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date | Wed, 23 Nov 2016 09:31:50 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Wed Nov 23 09:31:50 2016 -0500 @@ -0,0 +1,52 @@ +HMDB MS search - search by masses on HMDB online bank +===================================================== + +[![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-golm-lib_search.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-golm-lib_search) + +Our project +----------- +The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform. + + +HMDB MS search - search by masses on HMDB online bank +----------------------------------------------------- + +Tool using the HMDB Library Search. + + +Galaxy +------ +Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. + +Homepage: [https://galaxyproject.org/](https://galaxyproject.org/) + + +Dependencies using Conda +------------------------ +[![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) + + +[Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages. + +``` +#To install miniconda2 +#http://conda.pydata.org/miniconda.html +#To install the tool dependencies using conda: +conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template +#To set an environment: +conda create -n tool-bank-hmdb perl-soap-lite perl-list-moreutils perl-json perl-html-template` +#To activate the environment: +. activate tool-bank-hmdb +``` + + +Travis +------ +[![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-golm-lib_search.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-golm-lib_search) + +Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes! + +Historic contributors +--------------------- +- Franck Giacomoni @fgiacomoni - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme) +- Marion Landi - [LIFEGRID grant](http://www.lifegrid.fr/fr/home/le-pra-lifegrid.html) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)