diff wsdl_hmdb.pl @ 24:d8e2ede293a6 draft

Prod branch Updating with v.:CI_COMMIT_TAG- - Fxx
author fgiacomoni
date Thu, 19 May 2022 14:41:34 +0000
parents 2d8a310e86ce
children 8f7546d0b925
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line diff
--- a/wsdl_hmdb.pl	Thu May 19 13:43:09 2022 +0000
+++ b/wsdl_hmdb.pl	Thu May 19 14:41:34 2022 +0000
@@ -49,7 +49,7 @@
 				"output_tabular:s"	=> \$out_tab,			## option : path to the ouput (tabular : input+results )
 				"output_html|v:s"	=> \$out_html,			## option : path to the results view (output2)
 				"output_xlsx:s"		=> \$out_xls,			## option : path to the xls-like format output
-				#"advancedFeatures:i"=> \$advancedFeatures,	## option : set to 1 to get advanced options or 0 to get first level only.
+				"advancedFeatures:i"=> \$advancedFeatures,	## option : set to 1 to get advanced options or 0 to get first level only.
 				"verbose:i"			=> \$VERBOSE,			## VERBOSE Of the tool
             ) ;
 
@@ -160,7 +160,7 @@
 		
 		## hard modification with $max_query fixed at 1000 !!! Need to be refactoring
 		## Cutof will be done in next method after URI check
-		($result) = $oHmdb->getMatchesFromHmdb5WithUA($hmdb_pages, $mzs, 1000) ; ## hash format result
+		($result) = $oHmdb->parseHmdb5CSVResults($hmdb_pages, $mzs, 1000) ; ## hash format result
 		
 		## This previous step return results with cutoff on the number of entries returned !
 		
@@ -216,7 +216,7 @@
 	($tbody_object) = $oHtml->add_mz_to_tbody_object($tbody_object, $CONF->{HTML_ENTRIES_PER_PAGE}, $masses, $ids) ;
 	($tbody_object) = $oHtml->add_entries_to_tbody_object($tbody_object, $CONF->{HTML_ENTRIES_PER_PAGE}, $masses, $results) ;
 	
-	print Dumper $tbody_object ;
+	# print Dumper $tbody_object ;
 	
 	
 	my $output_html = $oHtml->write_html_skel(\$out_html, $tbody_object, $nb_pages_for_html_out, $search_condition, $CONF->{'HTML_TEMPLATE'}, $CONF->{'JS_GALAXY_PATH'}, $CONF->{'CSS_GALAXY_PATH'}) ;