Mercurial > repos > fgiacomoni > hmdb_ms_search
diff wsdl_hmdb.pl @ 24:d8e2ede293a6 draft
Prod branch Updating with v.:CI_COMMIT_TAG- - Fxx
author | fgiacomoni |
---|---|
date | Thu, 19 May 2022 14:41:34 +0000 |
parents | 2d8a310e86ce |
children | 8f7546d0b925 |
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--- a/wsdl_hmdb.pl Thu May 19 13:43:09 2022 +0000 +++ b/wsdl_hmdb.pl Thu May 19 14:41:34 2022 +0000 @@ -49,7 +49,7 @@ "output_tabular:s" => \$out_tab, ## option : path to the ouput (tabular : input+results ) "output_html|v:s" => \$out_html, ## option : path to the results view (output2) "output_xlsx:s" => \$out_xls, ## option : path to the xls-like format output - #"advancedFeatures:i"=> \$advancedFeatures, ## option : set to 1 to get advanced options or 0 to get first level only. + "advancedFeatures:i"=> \$advancedFeatures, ## option : set to 1 to get advanced options or 0 to get first level only. "verbose:i" => \$VERBOSE, ## VERBOSE Of the tool ) ; @@ -160,7 +160,7 @@ ## hard modification with $max_query fixed at 1000 !!! Need to be refactoring ## Cutof will be done in next method after URI check - ($result) = $oHmdb->getMatchesFromHmdb5WithUA($hmdb_pages, $mzs, 1000) ; ## hash format result + ($result) = $oHmdb->parseHmdb5CSVResults($hmdb_pages, $mzs, 1000) ; ## hash format result ## This previous step return results with cutoff on the number of entries returned ! @@ -216,7 +216,7 @@ ($tbody_object) = $oHtml->add_mz_to_tbody_object($tbody_object, $CONF->{HTML_ENTRIES_PER_PAGE}, $masses, $ids) ; ($tbody_object) = $oHtml->add_entries_to_tbody_object($tbody_object, $CONF->{HTML_ENTRIES_PER_PAGE}, $masses, $results) ; - print Dumper $tbody_object ; + # print Dumper $tbody_object ; my $output_html = $oHtml->write_html_skel(\$out_html, $tbody_object, $nb_pages_for_html_out, $search_condition, $CONF->{'HTML_TEMPLATE'}, $CONF->{'JS_GALAXY_PATH'}, $CONF->{'CSS_GALAXY_PATH'}) ;