Mercurial > repos > fgiacomoni > hmdb_ms_search
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| author | fgiacomoni |
|---|---|
| date | Fri, 25 Nov 2016 05:05:54 -0500 |
| parents | 6d0a0f8f672a |
| children | 505956db90c5 |
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HMDB MS search - search by masses on HMDB online bank ===================================================== [](http://bioconda.github.io) [](https://travis-ci.org/workflow4metabolomics/tool-bank-golm-lib_search) Our project ----------- The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform. HMDB MS search - search by masses on HMDB online bank ----------------------------------------------------- Tool using the HMDB Library Search. Galaxy ------ Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. Homepage: [https://galaxyproject.org/](https://galaxyproject.org/) Dependencies using Conda ------------------------ [](http://bioconda.github.io) [Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages. ``` #To install miniconda2 #http://conda.pydata.org/miniconda.html #To install the tool dependencies using conda: conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template #To set an environment: conda create -n tool-bank-hmdb perl-soap-lite perl-list-moreutils perl-json perl-html-template` #To activate the environment: . activate tool-bank-hmdb ``` Travis ------ [](https://travis-ci.org/workflow4metabolomics/tool-bank-golm-lib_search) Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes! Historic contributors --------------------- - Franck Giacomoni @fgiacomoni - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme) - Marion Landi - [LIFEGRID grant](http://www.lifegrid.fr/fr/home/le-pra-lifegrid.html) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)