Mercurial > repos > fgiacomoni > hmdb_ms_search

changeset 17:49f87ddb2c78 draft

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Master branch Updating - - Fxx
author fgiacomoni
date Wed, 23 Jan 2019 02:57:07 -0500
parents 8b2fbd449ffd
children ec7c05889e67
files lib/hmdb.pm wsdl_hmdb.pl
diffstat 2 files changed, 8 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/lib/hmdb.pm	Wed Jan 16 10:56:59 2019 -0500
+++ b/lib/hmdb.pm	Wed Jan 23 02:57:07 2019 -0500
@@ -245,7 +245,7 @@
 	 } else {
 	 	$status_line = $res->status_line ;
 	 	($status_line) = ($status_line =~ /(\d+)/);
-	 	warn "\tHMDB service issue !! the server returned a $status_line HTTP error\n" ;
+	 	warn "\t[HMDB service issue !! the server returned a $status_line HTTP error]" ;
 	 }
 	
 	
--- a/wsdl_hmdb.pl	Wed Jan 16 10:56:59 2019 -0500
+++ b/wsdl_hmdb.pl	Wed Jan 23 02:57:07 2019 -0500
@@ -255,15 +255,16 @@
 # Input : accurate mz or list of accurate masses
 # Author : Franck Giacomoni and Marion Landi
 # Email : fgiacomoni\@inra.fr
-# Version : 1.5
+# Version : 1.6
 # Created : 08/07/2012
-# Updated : 19/01/2018
+# Updated : 23/01/2019 - 1.6
 USAGE :		 
 		wsdl_hmdb.pl 	-mass [one mass or a string list of exact masses] -delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file] 
 		
 		or 
 		wsdl_hmdb.pl 	-masses [an input file of mzs] -colfactor [col of mz] -header_choice [yes|no] -nblineheader [nb of lines containing file header : 0-n]
-						-delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file] 
+						-delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file]
+						-advancedFeatures [Default 0, set to 1 for advanced features as logp, inchi, ...]
 						
 		or 
 		wsdl_hmdb.pl 	-h for help
@@ -322,6 +323,8 @@
 
 version 1.4 : 21 / 01 / 2016 - a clean version for community
 
-version 1.5 : 19 / 01 / 2018 - modifiy parser to match HMDB V4.0 formats
+version 1.5 : 19 / 01 / 2018 - modify parser to match HMDB V4.0 formats
+
+version 1.6 : 23 / 01 / 2019 - Manage UA http error and advanced feature from hmdb.
 
 =cut
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