diff HR2.xml @ 2:23970530a518 draft

master branch Updating with tag :CI_COMMIT_TAG - - Fxx
author fgiacomoni
date Tue, 17 Jan 2023 10:31:32 +0000
parents e2cbcf6fa22e
children 78afd7f439f3
line wrap: on
line diff
--- a/HR2.xml	Sun Dec 11 17:16:43 2022 +0000
+++ b/HR2.xml	Tue Jan 17 10:31:32 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="hr2" name="HR2 formula" version="1.1.2">
+<tool id="hr2" name="HR2 formula" version="1.1.3">
   <description>
         find a chemical formula from a accurate mass
   </description>
@@ -18,7 +18,7 @@
     #if str($input_type.choice) == "YES":
         -input "${input_type.input}"
         #if str($input_type.header.header_choice) == "yes":
-            -nblineheader "${$input_type.header.nbHeader}"
+            -nbHeader "${$input_type.header.nbHeader}"
         #end if
         -colId "${input_type.colId}" -colmass "${input_type.colmass}"
     #else: 
@@ -54,14 +54,14 @@
           <when value="no"/>
         </conditional>
         <param name="colId" label="Column of Id" type="data_column" data_ref="input" accept_default="true" />
-        <param name="colmass" label="Column of masses (MZ)" type="data_column" data_ref="input" accept_default="true" />
+        <param name="colmass" label="Column of masses (mz)" type="data_column" data_ref="input" accept_default="true" />
       </when>
       <when value="NO">
-        <param name="masse" size="20" type="text" label="Mass (MZ) to submit"  help="For a masses list, writes : m1 m2 m3. Your values ​​must be separated by spaces. You should use dot (.) like decimal separator"/>
+        <param name="masse" size="20" type="text" label="Mass (mz) to submit"  help="For a masses list, writes : m1 m2 m3. Your values ​​must be separated by spaces. You should use dot (.) like decimal separator"/>
       </when>
     </conditional>
     
-    <param name="tol" label="Delta of mass (MZ) (in mmu)" type="float" value="1.0" min="0" max="9.0" help="Tolerance should be between 0 and 9.0 mmu. Default value is 1.0 mmu"/>
+    <param name="tol" label="Delta of mass  " type="float" value="1.0" min="0" max="9.0" help="Tolerance should be between 0 and 9.0 Da. Default value is 1.0 mmu"/>
     <conditional name="mode_condition">
       <param name="mode" label="Molecular Species Searched" type="select" display="radio" help="Or ionization type of the molecule list. Use neutral only if only if the masses correspond to molecules and not to ions : query doesn't be a [M+H] or [M-H] ion">
         <option value="positive">positive</option>
@@ -192,7 +192,7 @@
 -----------------
 
 
-.. image:: ./static/images/metabolomics/hr2.png
+.. image:: hr2.png
         :width: 800