Mercurial > repos > fgiacomoni > hr2
diff HR2.xml @ 2:23970530a518 draft
master branch Updating with tag :CI_COMMIT_TAG - - Fxx
| author | fgiacomoni |
|---|---|
| date | Tue, 17 Jan 2023 10:31:32 +0000 |
| parents | e2cbcf6fa22e |
| children | 78afd7f439f3 |
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--- a/HR2.xml Sun Dec 11 17:16:43 2022 +0000 +++ b/HR2.xml Tue Jan 17 10:31:32 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="hr2" name="HR2 formula" version="1.1.2"> +<tool id="hr2" name="HR2 formula" version="1.1.3"> <description> find a chemical formula from a accurate mass </description> @@ -18,7 +18,7 @@ #if str($input_type.choice) == "YES": -input "${input_type.input}" #if str($input_type.header.header_choice) == "yes": - -nblineheader "${$input_type.header.nbHeader}" + -nbHeader "${$input_type.header.nbHeader}" #end if -colId "${input_type.colId}" -colmass "${input_type.colmass}" #else: @@ -54,14 +54,14 @@ <when value="no"/> </conditional> <param name="colId" label="Column of Id" type="data_column" data_ref="input" accept_default="true" /> - <param name="colmass" label="Column of masses (MZ)" type="data_column" data_ref="input" accept_default="true" /> + <param name="colmass" label="Column of masses (mz)" type="data_column" data_ref="input" accept_default="true" /> </when> <when value="NO"> - <param name="masse" size="20" type="text" label="Mass (MZ) to submit" help="For a masses list, writes : m1 m2 m3. Your values must be separated by spaces. You should use dot (.) like decimal separator"/> + <param name="masse" size="20" type="text" label="Mass (mz) to submit" help="For a masses list, writes : m1 m2 m3. Your values must be separated by spaces. You should use dot (.) like decimal separator"/> </when> </conditional> - <param name="tol" label="Delta of mass (MZ) (in mmu)" type="float" value="1.0" min="0" max="9.0" help="Tolerance should be between 0 and 9.0 mmu. Default value is 1.0 mmu"/> + <param name="tol" label="Delta of mass " type="float" value="1.0" min="0" max="9.0" help="Tolerance should be between 0 and 9.0 Da. Default value is 1.0 mmu"/> <conditional name="mode_condition"> <param name="mode" label="Molecular Species Searched" type="select" display="radio" help="Or ionization type of the molecule list. Use neutral only if only if the masses correspond to molecules and not to ions : query doesn't be a [M+H] or [M-H] ion"> <option value="positive">positive</option> @@ -192,7 +192,7 @@ ----------------- -.. image:: ./static/images/metabolomics/hr2.png +.. image:: hr2.png :width: 800
