Mercurial > repos > fgiacomoni > lipidmaps_textsearch
diff t/wsdl_lmTest.t @ 2:1276908e8fc4 draft
Master branch Updating - - Fxx
| author | fgiacomoni |
|---|---|
| date | Mon, 20 Aug 2018 09:17:05 -0400 |
| parents | e8bd49794291 |
| children |
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--- a/t/wsdl_lmTest.t Tue Apr 11 04:09:58 2017 -0400 +++ b/t/wsdl_lmTest.t Mon Aug 20 09:17:05 2018 -0400 @@ -44,6 +44,428 @@ 'Method \'round_nums\' works with a list of float and return a well rounded list'); - +print "\n** Test $current_test convert_tbody_to_globalmatrix with a list of hearders and a tbody_object **\n" ; $current_test++; +is_deeply( convert_tbody_to_globalmatrixTest( + ['MASS', 'CLUSTER_DELTA', 'CLUSTER_FORMULA', 'CLUSTER_NAME', 'CLUSTER_TOTAL'], + [ + { + 'PAGE_NB' => 1, + 'MASSES' => [ + { + 'TRANSFORMS' => [ + { + 'COLOR' => 'grey-bolt', + 'TRANSFO_TYPE' => 'Init_MZ', + 'CLUSTERS' => [ + { + 'CLUSTER_FORMULA' => 'C30H59O12P', + 'NB_ENTRY_BY_MASS' => 0, + 'NB_CLUSTER_BY_MASS' => 1, + 'PARENT_ID' => '10_0_0', + 'COLOR' => 'white', + 'CLUSTER_NAME' => 'PI_21:0', + 'CLUSTER_TOTAL' => 1, + 'NB_MASS' => 10, + 'CLUSTER_DELTA' => '-0.23', + 'ENTRIES' => [ + { + 'COLOR' => 'white', + 'ENTRY_FORMULA' => 'C30H59O12P', + 'NB_CLUSTER_BY_MASS' => 1, + 'NB_ENTRY_BY_MASS' => 1, + 'ENTRY_COMMONNAME' => 'PI(21:0/0:0)', + 'ENTRY_SYSTNAME' => '1-heneicosanoyl-glycero-3-phospho-(1\'-myo-inositol)', + 'LM_ID' => 'LMGP06050025', + 'MZ_DELTA' => '-0.23', + 'NB_MASS' => 10, + 'CLUSTER_ID' => 1 + } + ] + } + ] + } + ], + 'COLOR' => 'white', + 'MASS' => '642.5987', + 'TOTAL' => 1, + 'NB_ENTRY_BY_MASS' => 0, + 'NB_CLUSTER_BY_MASS' => 0, + 'NB_MASS' => 10 + }, + { + 'COLOR' => 'green', + 'TRANSFORMS' => [ + { + 'TRANSFO_TYPE' => 'Init_MZ', + 'CLUSTERS' => [ + { + 'ENTRIES' => [ + { + 'LM_ID' => 'LMGP06050024', + 'NB_MASS' => 13, + 'CLUSTER_ID' => 1, + 'MZ_DELTA' => '-0.18', + 'ENTRY_COMMONNAME' => 'PI(22:0/0:0)', + 'ENTRY_SYSTNAME' => '1-docosanoyl-glycero-3-phospho-(1\'-myo-inositol)', + 'ENTRY_FORMULA' => 'C31H61O12P', + 'NB_ENTRY_BY_MASS' => 1, + 'NB_CLUSTER_BY_MASS' => 1, + 'COLOR' => 'green' + } + ], + 'CLUSTER_DELTA' => '-0.18', + 'NB_MASS' => 13, + 'CLUSTER_TOTAL' => 1, + 'COLOR' => 'green', + 'CLUSTER_NAME' => 'PI_22:0', + 'PARENT_ID' => '13_0_0', + 'NB_CLUSTER_BY_MASS' => 1, + 'NB_ENTRY_BY_MASS' => 0, + 'CLUSTER_FORMULA' => 'C31H61O12P' + } + ], + 'COLOR' => 'green-bolt' + } + ], + 'MASS' => '656.5718', + 'NB_MASS' => 13, + 'TOTAL' => 1, + 'NB_ENTRY_BY_MASS' => 0, + 'NB_CLUSTER_BY_MASS' => 0 + }, + { + 'TRANSFORMS' => [ + { + 'CLUSTERS' => [ + { + 'ENTRIES' => [ + { + 'CLUSTER_ID' => 1, + 'NB_MASS' => 14, + 'MZ_DELTA' => '-0.19', + 'LM_ID' => 'LMGP06050024', + 'ENTRY_SYSTNAME' => '1-docosanoyl-glycero-3-phospho-(1\'-myo-inositol)', + 'ENTRY_COMMONNAME' => 'PI(22:0/0:0)', + 'NB_CLUSTER_BY_MASS' => 1, + 'NB_ENTRY_BY_MASS' => 1, + 'ENTRY_FORMULA' => 'C31H61O12P', + 'COLOR' => 'white' + } + ], + 'NB_MASS' => 14, + 'CLUSTER_DELTA' => '-0.19', + 'CLUSTER_TOTAL' => 1, + 'CLUSTER_NAME' => 'PI_22:0', + 'COLOR' => 'white', + 'PARENT_ID' => '14_0_0', + 'NB_CLUSTER_BY_MASS' => 1, + 'NB_ENTRY_BY_MASS' => 0, + 'CLUSTER_FORMULA' => 'C31H61O12P' + } + ], + 'TRANSFO_TYPE' => 'Init_MZ', + 'COLOR' => 'grey-bolt' + } + ], + 'COLOR' => 'white', + 'NB_CLUSTER_BY_MASS' => 0, + 'NB_ENTRY_BY_MASS' => 0, + 'TOTAL' => 1, + 'NB_MASS' => 14, + 'MASS' => '656.5802' + }, + { + 'NB_ENTRY_BY_MASS' => 0, + 'TOTAL' => 1, + 'NB_CLUSTER_BY_MASS' => 0, + 'NB_MASS' => 15, + 'MASS' => '656.5886', + 'TRANSFORMS' => [ + { + 'COLOR' => 'green-bolt', + 'TRANSFO_TYPE' => 'Init_MZ', + 'CLUSTERS' => [ + { + 'ENTRIES' => [ + { + 'ENTRY_FORMULA' => 'C31H61O12P', + 'NB_ENTRY_BY_MASS' => 1, + 'NB_CLUSTER_BY_MASS' => 1, + 'COLOR' => 'green', + 'LM_ID' => 'LMGP06050024', + 'CLUSTER_ID' => 1, + 'NB_MASS' => 15, + 'MZ_DELTA' => '-0.20', + 'ENTRY_SYSTNAME' => '1-docosanoyl-glycero-3-phospho-(1\'-myo-inositol)', + 'ENTRY_COMMONNAME' => 'PI(22:0/0:0)' + } + ], + 'CLUSTER_DELTA' => '-0.20', + 'NB_MASS' => 15, + 'CLUSTER_TOTAL' => 1, + 'CLUSTER_NAME' => 'PI_22:0', + 'COLOR' => 'green', + 'PARENT_ID' => '15_0_0', + 'NB_ENTRY_BY_MASS' => 0, + 'NB_CLUSTER_BY_MASS' => 1, + 'CLUSTER_FORMULA' => 'C31H61O12P' + } + ] + } + ], + 'COLOR' => 'green' + } + ] + } + ] ), + [ + [ + 'MASS', + 'CLUSTER_DELTA', + 'CLUSTER_FORMULA', + 'CLUSTER_NAME', + 'CLUSTER_TOTAL' + ], + [ + '642.5987', + '-0.23', + 'C30H59O12P', + 'PI_21:0', + 1 + ], + [ + '656.5718', + '-0.18', + 'C31H61O12P', + 'PI_22:0', + 1 + ], + [ + '656.5802', + '-0.19', + 'C31H61O12P', + 'PI_22:0', + 1 + ], + [ + '656.5886', + '-0.20', + 'C31H61O12P', + 'PI_22:0', + 1 + ] + ], + 'Method \'convert_tbody_to_globalmatrix\' works with a list of headers and a wellformed tbody_object and return a well formed matrix'); - +print "\n** Test $current_test convert_tbody_to_globalmatrix with no headers but with a tbody_object **\n" ; $current_test++; +is_deeply( convert_tbody_to_globalmatrixTest( + undef, + [ + { + 'PAGE_NB' => 1, + 'MASSES' => [ + { + 'TRANSFORMS' => [ + { + 'COLOR' => 'grey-bolt', + 'TRANSFO_TYPE' => 'Init_MZ', + 'CLUSTERS' => [ + { + 'CLUSTER_FORMULA' => 'C30H59O12P', + 'NB_ENTRY_BY_MASS' => 0, + 'NB_CLUSTER_BY_MASS' => 1, + 'PARENT_ID' => '10_0_0', + 'COLOR' => 'white', + 'CLUSTER_NAME' => 'PI_21:0', + 'CLUSTER_TOTAL' => 1, + 'NB_MASS' => 10, + 'CLUSTER_DELTA' => '-0.23', + 'ENTRIES' => [ + { + 'COLOR' => 'white', + 'ENTRY_FORMULA' => 'C30H59O12P', + 'NB_CLUSTER_BY_MASS' => 1, + 'NB_ENTRY_BY_MASS' => 1, + 'ENTRY_COMMONNAME' => 'PI(21:0/0:0)', + 'ENTRY_SYSTNAME' => '1-heneicosanoyl-glycero-3-phospho-(1\'-myo-inositol)', + 'LM_ID' => 'LMGP06050025', + 'MZ_DELTA' => '-0.23', + 'NB_MASS' => 10, + 'CLUSTER_ID' => 1 + } + ] + } + ] + } + ], + 'COLOR' => 'white', + 'MASS' => '642.5987', + 'TOTAL' => 1, + 'NB_ENTRY_BY_MASS' => 0, + 'NB_CLUSTER_BY_MASS' => 0, + 'NB_MASS' => 10 + }, + { + 'COLOR' => 'green', + 'TRANSFORMS' => [ + { + 'TRANSFO_TYPE' => 'Init_MZ', + 'CLUSTERS' => [ + { + 'ENTRIES' => [ + { + 'LM_ID' => 'LMGP06050024', + 'NB_MASS' => 13, + 'CLUSTER_ID' => 1, + 'MZ_DELTA' => '-0.18', + 'ENTRY_COMMONNAME' => 'PI(22:0/0:0)', + 'ENTRY_SYSTNAME' => '1-docosanoyl-glycero-3-phospho-(1\'-myo-inositol)', + 'ENTRY_FORMULA' => 'C31H61O12P', + 'NB_ENTRY_BY_MASS' => 1, + 'NB_CLUSTER_BY_MASS' => 1, + 'COLOR' => 'green' + } + ], + 'CLUSTER_DELTA' => '-0.18', + 'NB_MASS' => 13, + 'CLUSTER_TOTAL' => 1, + 'COLOR' => 'green', + 'CLUSTER_NAME' => 'PI_22:0', + 'PARENT_ID' => '13_0_0', + 'NB_CLUSTER_BY_MASS' => 1, + 'NB_ENTRY_BY_MASS' => 0, + 'CLUSTER_FORMULA' => 'C31H61O12P' + } + ], + 'COLOR' => 'green-bolt' + } + ], + 'MASS' => '656.5718', + 'NB_MASS' => 13, + 'TOTAL' => 1, + 'NB_ENTRY_BY_MASS' => 0, + 'NB_CLUSTER_BY_MASS' => 0 + }, + { + 'TRANSFORMS' => [ + { + 'CLUSTERS' => [ + { + 'ENTRIES' => [ + { + 'CLUSTER_ID' => 1, + 'NB_MASS' => 14, + 'MZ_DELTA' => '-0.19', + 'LM_ID' => 'LMGP06050024', + 'ENTRY_SYSTNAME' => '1-docosanoyl-glycero-3-phospho-(1\'-myo-inositol)', + 'ENTRY_COMMONNAME' => 'PI(22:0/0:0)', + 'NB_CLUSTER_BY_MASS' => 1, + 'NB_ENTRY_BY_MASS' => 1, + 'ENTRY_FORMULA' => 'C31H61O12P', + 'COLOR' => 'white' + } + ], + 'NB_MASS' => 14, + 'CLUSTER_DELTA' => '-0.19', + 'CLUSTER_TOTAL' => 1, + 'CLUSTER_NAME' => 'PI_22:0', + 'COLOR' => 'white', + 'PARENT_ID' => '14_0_0', + 'NB_CLUSTER_BY_MASS' => 1, + 'NB_ENTRY_BY_MASS' => 0, + 'CLUSTER_FORMULA' => 'C31H61O12P' + } + ], + 'TRANSFO_TYPE' => 'Init_MZ', + 'COLOR' => 'grey-bolt' + } + ], + 'COLOR' => 'white', + 'NB_CLUSTER_BY_MASS' => 0, + 'NB_ENTRY_BY_MASS' => 0, + 'TOTAL' => 1, + 'NB_MASS' => 14, + 'MASS' => '656.5802' + }, + { + 'NB_ENTRY_BY_MASS' => 0, + 'TOTAL' => 1, + 'NB_CLUSTER_BY_MASS' => 0, + 'NB_MASS' => 15, + 'MASS' => '656.5886', + 'TRANSFORMS' => [ + { + 'COLOR' => 'green-bolt', + 'TRANSFO_TYPE' => 'Init_MZ', + 'CLUSTERS' => [ + { + 'ENTRIES' => [ + { + 'ENTRY_FORMULA' => 'C31H61O12P', + 'NB_ENTRY_BY_MASS' => 1, + 'NB_CLUSTER_BY_MASS' => 1, + 'COLOR' => 'green', + 'LM_ID' => 'LMGP06050024', + 'CLUSTER_ID' => 1, + 'NB_MASS' => 15, + 'MZ_DELTA' => '-0.20', + 'ENTRY_SYSTNAME' => '1-docosanoyl-glycero-3-phospho-(1\'-myo-inositol)', + 'ENTRY_COMMONNAME' => 'PI(22:0/0:0)' + } + ], + 'CLUSTER_DELTA' => '-0.20', + 'NB_MASS' => 15, + 'CLUSTER_TOTAL' => 1, + 'CLUSTER_NAME' => 'PI_22:0', + 'COLOR' => 'green', + 'PARENT_ID' => '15_0_0', + 'NB_ENTRY_BY_MASS' => 0, + 'NB_CLUSTER_BY_MASS' => 1, + 'CLUSTER_FORMULA' => 'C31H61O12P' + } + ] + } + ], + 'COLOR' => 'green' + } + ] + } + ] ), + [ + [ + 'MASS', + 'CLUSTER_DELTA', + 'CLUSTER_FORMULA', + 'CLUSTER_NAME', + 'CLUSTER_TOTAL' + ], + [ + '642.5987', + '-0.23', + 'C30H59O12P', + 'PI_21:0', + 1 + ], + [ + '656.5718', + '-0.18', + 'C31H61O12P', + 'PI_22:0', + 1 + ], + [ + '656.5802', + '-0.19', + 'C31H61O12P', + 'PI_22:0', + 1 + ], + [ + '656.5886', + '-0.20', + 'C31H61O12P', + 'PI_22:0', + 1 + ] + ], + 'Method \'convert_tbody_to_globalmatrix\' works with no given list of headers and a wellformed tbody_object and return a well formed matrix');