Mercurial > repos > fgiacomoni > lipidmaps_textsearch
view t/lib/lmTest.pm @ 0:e8bd49794291 draft
Init repository with last lipidmaps_textsearch master version
| author | fgiacomoni |
|---|---|
| date | Tue, 11 Apr 2017 03:47:06 -0400 |
| parents | |
| children | 1276908e8fc4 |
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package lib::lmTest ; use diagnostics; # this gives you more debugging information use warnings; # this warns you of bad practices use strict; # this prevents silly errors use Exporter ; use Carp ; use Data::Dumper ; our $VERSION = "1.0"; our @ISA = qw(Exporter); our @EXPORT = qw( build_lm_mass_queryTest round_numsTest ); our %EXPORT_TAGS = ( ALL => [qw( build_lm_mass_queryTest round_numsTest )] ); use lib '/Users/fgiacomoni/Inra/labs/perl/galaxy_tools/lipidmaps' ; use lib::lipidmaps qw( :ALL ) ; use lib::operations qw( :ALL ) ; sub build_lm_mass_queryTest { my ( $delta, $selected_cat, $selected_cl, $selected_subcl ) = @_ ; my ( $cat, $cl, $subcl ) = (undef, undef, undef) ; my $url = 'http://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessTextSearch&OutputColumnHeader=No&OutputMode=File&OutputType=TSV' ; if ( ( defined $selected_subcl) or ( defined $selected_cl ) or ( defined $selected_cat ) ) { if ( ( $selected_cat !~ /^NA/ ) ) { ( $cat ) = ( \$selected_cat ) ; } if ( ( $selected_cl !~ /^NA(.*)/ ) ) { ( $cl ) = ( \$selected_cl ) ; } if ( ( $selected_subcl !~ /^NA(.*)/ ) ) { ( $subcl ) = ( \$selected_subcl ) ; } } else { croak "No selected category or classification ids list\n" ; } my $olm = lib::lipidmaps->new() ; my $ref_url = $olm->build_lm_mass_query(\$url, \$delta, $cat, $cl, $subcl) ; my $complete_url = $$ref_url ; # print $complete_url ; return ($complete_url) ; } ## SUB TEST for sub round_numsTest { # get values my ( $numbers, $decimal ) = @_; my $oround = lib::operations->new() ; my $rounds = $oround->round_nums($numbers, $decimal) ; return($rounds) ; } ## End SUB 1 ;
