Mercurial > repos > fgiacomoni > massbank_ws_searchspectrum
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| author | fgiacomoni |
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| date | Wed, 19 Apr 2017 11:31:58 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Wed Apr 19 11:31:58 2017 -0400 @@ -0,0 +1,53 @@ +MassBank spectrum searches - Search by pseudo-spectra on a High Quality Mass Spectral Database. +=============================================================================================== + +[](http://bioconda.github.io) [](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search) + +Our project +----------- +The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform. + + +MassBank spectrum searches - Search by pseudo-spectra on a High Quality Mass Spectral Database. +----------------------------------------------------------------------------------------------- + +Tool using the MassBank API Spectrum Search. + + +Galaxy +------ +Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. + +Homepage: [https://galaxyproject.org/](https://galaxyproject.org/) + + +Dependencies using Conda +------------------------ +[](http://bioconda.github.io) + + +[Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages. + +``` +#To install miniconda2 +#http://conda.pydata.org/miniconda.html +#To install the tool dependencies using conda: +conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template +#To set an environment: +conda create -n wrapper-bank-massbank-spectrum_search perl-soap-lite perl-list-moreutils perl-json perl-html-template` +#To activate the environment: +. activate wrapper-bank-massbank-spectrum_search +``` + + +Travis +------ +[](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search) + +Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes! + +Historic contributors +--------------------- +- Franck Giacomoni @fgiacomoni - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme) +- Marion Landi - [LIFEGRID grant](http://www.lifegrid.fr/fr/home/le-pra-lifegrid.html) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme) +- Yann Guitton @yguitton - [LABERCA - Laboratory of Food Contaminants and Residue Analysis](http://www.laberca.org/) - Ecole Nationale Vétérinaire, Agroalimentaire et de l'Alimentation Nantes-Atlantique - France