Mercurial > repos > fgiacomoni > xseekerpreparator
comparison test/test.sh @ 0:1660665c081e draft
#issue9 branch Updating - - Fxx
| author | fgiacomoni |
|---|---|
| date | Thu, 19 Nov 2020 14:28:46 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:1660665c081e |
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| 1 #!/bin/sh | |
| 2 | |
| 3 currdir=`pwd` | |
| 4 cd `dirname $(readlink -f $0)` | |
| 5 | |
| 6 ln -s ../data/ ./data | |
| 7 | |
| 8 ~/R/bin/Rscript $(realpath ../XSeekerPreparator.R) \ | |
| 9 -i $(realpath ../data/full.rdata) \ | |
| 10 -m $(realpath ../data/models.R) \ | |
| 11 -c $(realpath ../data/SERUM_v2019Jan17.tabular) \ | |
| 12 -o $(realpath ../test.sqlite) \ | |
| 13 || true | |
| 14 | |
| 15 | |
| 16 | |
| 17 rm -rf "./data" | |
| 18 cd "${currdir}" |