Mercurial > repos > fgiacomoni > xseekerpreparator

diff test/test.sh @ 0:1660665c081e draft

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#issue9 branch Updating - - Fxx
author fgiacomoni
date Thu, 19 Nov 2020 14:28:46 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test/test.sh	Thu Nov 19 14:28:46 2020 +0000
@@ -0,0 +1,18 @@
+#!/bin/sh
+
+currdir=`pwd`
+cd `dirname $(readlink -f $0)`
+
+ln -s ../data/ ./data
+
+~/R/bin/Rscript $(realpath ../XSeekerPreparator.R)  \
+    -i $(realpath ../data/full.rdata)               \
+    -m $(realpath ../data/models.R)                 \
+    -c $(realpath ../data/SERUM_v2019Jan17.tabular) \
+    -o $(realpath ../test.sqlite)                   \
+|| true
+
+
+
+rm -rf "./data"
+cd "${currdir}"