Mercurial > repos > fgiacomoni > xseekerpreparator
view data/models.R @ 0:1660665c081e draft
#issue9 branch Updating - - Fxx
author | fgiacomoni |
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date | Thu, 19 Nov 2020 14:28:46 +0000 |
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tryCatch({ DBModelR::ModelDefinition(table="yui", fields=list(yui="INTEGER")) }, error=function(e) { stop("Please, install DBModelR before you source this file.") }) list( adduct=DBModelR::ModelDefinition( table="adduct", fields=list( name="TEXT", mass="FLOAT", charge="INTEGER", multi="INTEGER", formula_add="TEXT", formula_ded="TEXT", sign="TEXT", oidscore="INTEGER", quasi="INTEGER", ips="FLOAT" ) ), cluster=DBModelR::ModelDefinition( table="cluster", fields=list( clusterID="INTEGER", formula="TEXT", annotation="TEXT", coeff="FLOAT", r_squared="FLOAT", charge="INTEGER", mean_rt="FLOAT", score="FLOAT", deviation="FLOAT", status="TEXT", adduct="TEXT", curent_group="INTEGER", pc_group="INTEGER", align_group="INTEGER", xcms_group="INTEGER" ), one=list("sample", "compound") ), compound=DBModelR::ModelDefinition( table="compound", fields=list( name="TEXT", common_name="TEXT", formula="TEXT", charge="INTEGER", date="TEXT", mz="FLOAT" ) ), feature=DBModelR::ModelDefinition( table="feature", fields=list( featureID="INTEGER", mz="FLOAT", mz_min="FLOAT", mz_max="FLOAT", rt="FLOAT", rt_min="FLOAT", rt_max="FLOAT", int_o="FLOAT", int_b="FLOAT", max_o="FLOAT", iso="TEXT", abundance="FLOAT" ), one=list("cluster") ), instrument=DBModelR::ModelDefinition( table="instrument", fields=list( model="TEXT", manufacturer="TEXT", analyzer="TEXT", detector_type="TEXT", ion_source="TEXT" ) ), instrument_config=DBModelR::ModelDefinition( table="instrument_config", fields=list( resolution="TEXT", agc_target="TEXT", maximum_IT="TEXT", number_of_scan_range="TEXT", scan_range="TEXT", version="TEXT" ) ), project=DBModelR::ModelDefinition( table="project", fields=list( name="TEXT", comment="TEXT" ), one=list("sample") ), sample=DBModelR::ModelDefinition( table="sample", fields=list( name="TEXT", path="TEXT", polarity="TEXT", kind="TEXT", ## rdata or mxml or enriched_rdata raw="BLOB" ), one=list( "peak_picking_parameters", "pairing_parameters", "alignmenmt_parameters", "camera_parameters", "instrument", "instrument_config", "software", "smol_xcms_set" ) ), smol_xcms_set=DBModelR::ModelDefinition( table="smol_xcms_set", fields=list( raw="BLOB" ) ), software=DBModelR::ModelDefinition( table="software", fields=list( name="TEXT", version="TEXT" ) ), # camera_parameters=DBModelR::ModelDefinition( # table="camera_parameters", # fields=list() # ), # pairing_parameters=DBModelR::ModelDefinition( # table="pairing_parameters", # fields=list() # ), peak_picking_parameters=DBModelR::ModelDefinition( table="peak_picking_parameters", fields=list( ppm="FLOAT", peakwidth="TEXT", snthresh="TEXT", prefilterStep="TEXT", prefilterLevel="TEXT", mzdiff="TEXT", fitgauss="TEXT", noise="TEXT", mzCenterFun="TEXT", integrate="INTEGER", firstBaselineCheck="TEXT", snthreshIsoROIs="TEXT", maxCharge="INTEGER", maxIso="INTEGER", mzIntervalExtension="TEXT" ) ), alignmenmt_parameters=DBModelR::ModelDefinition( table="alignmenmt_parameters", fields=list( binSize="TEXT", centerSample="TEXT", response="TEXT", distFun="TEXT", gapInit="TEXT", gapExtend="TEXT", factorDiag="TEXT", factorGap="TEXT", localAlignment="INTEGER", initPenalty="TEXT", bw="TEXT", minFraction="TEXT", minSamples="TEXT", maxFeatures="TEXT" ) ) )