# HG changeset patch
# User florianbegusch
# Date 1527087134 14400
# Node ID 19706b0f5de74c2e935e7f5f42840534c254b0e5
# Parent  1722a584c78c771fc1d7e87e7dd23a26feb669d6
Uploaded

diff -r 1722a584c78c -r 19706b0f5de7 qiime_composition_add-pseudocount.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime_composition_add-pseudocount.xml	Wed May 23 10:52:14 2018 -0400
@@ -0,0 +1,51 @@
+<?xml version="1.0" ?>
+<tool id="qiime_composition_add-pseudocount" name="qiime composition add-pseudocount" version="2018.2">
+	<description> - Add pseudocount to table</description>
+	<requirements>
+		<requirement type="package" version="2018.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+  
+  qiime composition add-pseudocount --i-table=$itable
+  
+  #if $ppseudocount:
+   --p-pseudocount=$ppseudocount
+  #end if
+
+  #if str($cmdconfig) != 'None':
+   --cmd-config=$cmdconfig
+  #end if
+  
+  --o-composition-table=ocompositiontable
+  ;
+  cp ocompositiontable.qza $ocompositiontable
+
+]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Frequency] - The feature table to which pseudocounts should be added.  [required]" name="itable" optional="False" type="data"/>
+		<param label="--p-pseudocount: The value to add to all counts in the feature table.  [default: 1]" name="ppseudocount" optional="True" type="integer" value="1"/>
+		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: compositiontable.qza" name="ocompositiontable"/>
+	</outputs>
+	<help><![CDATA[
+Add pseudocount to table
+------------------------
+
+Increment all counts in table by pseudocount.
+
+Parameters
+----------
+table : FeatureTable[Frequency]
+    The feature table to which pseudocounts should be added.
+pseudocount : Int, optional
+    The value to add to all counts in the feature table.
+
+Returns
+-------
+composition_table : FeatureTable[Composition]
+    The resulting feature table.
+ ]]>
+</help>
+</tool>