# HG changeset patch
# User florianbegusch
# Date 1527085765 14400
# Node ID a1446be8a7e63376d2b3cb77afbf55ed88bafa8e
# Parent  ff20c5c00ef0e5eabcee3191e645cce2fa38a1f9
Deleted selected files

diff -r ff20c5c00ef0 -r a1446be8a7e6 qiime_alignment_mafft.xml
--- a/qiime_alignment_mafft.xml	Wed May 23 10:22:44 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,49 +0,0 @@
-<?xml version="1.0" ?>
-<tool id="qiime_alignment_mafft" name="qiime alignment mafft" version="2018.4">
-	<description> - De novo multiple sequence alignment with MAFFT</description>
-	<requirements>
-		<requirement type="package" version="2018.4">qiime2</requirement>
-	</requirements>
-	<command><![CDATA[
- 
-  qiime alignment mafft --i-sequences=$isequences
-  #set $pnthreads = '${GALAXY_SLOTS:-4}'
-
-  #if str($pnthreads):
-   --p-n-threads="$pnthreads"
-  #end if
-
-  #if str($cmdconfig) != 'None':
-   --cmd-config=$cmdconfig
-  #end if
-  
-   --o-alignment=oalignment;
-   
-   cp oalignment.qza $oalignment
-
-]]></command>
-	<inputs>
-		<param format="qza,no_unzip.zip" label="--i-sequences: FeatureData[Sequence] - The sequences to be aligned.  [required]" name="isequences" optional="False" type="data"/>
-		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
-	</inputs>
-	<outputs>
-		<data format="qza" label="${tool.name} on ${on_string}: alignment.qza" name="oalignment"/>
-	</outputs>
-	<help><![CDATA[
-De novo multiple sequence alignment with MAFFT
-----------------------------------------------
-
-Perform de novo multiple sequence alignment using MAFFT.
-
-Parameters
-----------
-sequences : FeatureData[Sequence]
-    The sequences to be aligned.
-
-Returns
--------
-alignment : FeatureData[AlignedSequence]
-    The aligned sequences.
- ]]>
-</help>
-</tool>