0
+ − 1 <?xml version="1.0" ?>
+ − 2 <tool id="qiime_feature-table_relative-frequency" name="qiime feature-table relative-frequency" version="2018.4">
+ − 3 <description> - Convert to relative frequencies</description>
+ − 4 <requirements>
+ − 5 <requirement type="package" version="2018.4">qiime2</requirement>
+ − 6 </requirements>
+ − 7 <command>
+ − 8 <![CDATA[
+ − 9 qiime feature-table relative-frequency --i-table=$itable
+ − 10
+ − 11 #if str($cmdconfig) != 'None':
+ − 12 --cmd-config=$cmdconfig
+ − 13 #end if
+ − 14 --o-relative-frequency-table=orelativefrequencytable;
+ − 15
+ − 16 cp orelativefrequencytable.qza $orelativefrequencytable;
+ − 17 ]]>
+ − 18 </command>
+ − 19 <inputs>
+ − 20 <param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Frequency] The feature table to be converted into relative frequencies. [required]" name="itable" optional="False" type="data"/>
+ − 21 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
+ − 22 </inputs>
+ − 23 <outputs>
+ − 24 <data format="qza" label="${tool.name} on ${on_string}: relative-frequency-table.qza" name="orelativefrequencytable"/>
+ − 25 </outputs>
+ − 26 <help>
+ − 27 <![CDATA[
+ − 28 Rarefy table
+ − 29 -------------
+ − 30
+ − 31 Subsample frequencies from all samples without replacement so that the sum
+ − 32 of frequencies in each sample is equal to sampling-depth.
+ − 33
+ − 34 Parameters
+ − 35 ----------
+ − 36 table : FeatureTable[Frequency]
+ − 37 The feature table to be rarefied.
+ − 38 sampling_depth : Int % Range(1, None)
+ − 39 The total frequency that each sample should be rarefied to. Samples
+ − 40 where the sum of frequencies is less than the sampling depth will be
+ − 41 not be included in the resulting table.
+ − 42
+ − 43 Returns
+ − 44 -------
+ − 45 rarefied_table : FeatureTable[Frequency]
+ − 46 The resulting rarefied feature table.
+ − 47 ]]>
+ − 48 </help>
+ − 49 </tool>
