--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime_diversity_procrustes-analysis.xml	Thu May 24 02:11:44 2018 -0400
@@ -0,0 +1,58 @@
+<?xml version="1.0" ?>
+<tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis" version="2018.4">
+	<description> - Procrustes Analysis</description>
+	<requirements>
+		<requirement type="package" version="2018.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+  qiime diversity procrustes-analysis --i-reference=$ireference --i-other=$iother
+  
+  #if $pdimensions:
+   --p-dimensions=$pdimensions
+  #end if
+  
+   --o-transformed-other=otransformedother --o-transformed-reference=otransformedreference
+   
+  #if str($cmdconfig) != 'None':
+   --cmd-config=$cmdconfig
+  #end if
+  ;
+  cp otransformedother.qza $otransformedother;
+  cp otransformedreference.qza $otransformedreference;
+  ]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-reference: PCoAResults The ordination matrix to which data is fitted to.  [required]" name="ireference" optional="False" type="data"/>
+		<param format="qza,no_unzip.zip" label="--i-other: PCoAResults The ordination matrix that's fitted to the reference ordination.  [required]" name="iother" optional="False" type="data"/>
+
+		<param label="--p-dimensions: [default: 5]" name="pdimensions" optional="True" type="integer" value="5"/>
+
+		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: transformed-other.qza" name="otransformedother"/>
+		<data format="qza" label="${tool.name} on ${on_string}: transformed-reference.qza" name="otransformedreference"/>
+	</outputs>
+	<help><![CDATA[
+Procrustes Analysis
+--------------------
+
+Fit two ordination matrices with Procrustes analysis
+
+Parameters
+----------
+reference : PCoAResults
+    The ordination matrix to which data is fitted to.
+other : PCoAResults
+    The ordination matrix that's fitted to the reference ordination.
+dimensions : Int % Range(1, None), optional
+		\
+
+Returns
+-------
+transformed_reference : PCoAResults
+    A normalized version of the "reference" ordination matrix.
+transformed_other : PCoAResults
+    A normalized and fitted version of the "other" ordination matrix.
+     ]]>
+	</help>
+</tool>