Mercurial > repos > florianbegusch > qiime2_all
diff qiime_feature-table_merge-seqs.xml @ 0:09b7bcb72fa7 draft
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author | florianbegusch |
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date | Thu, 24 May 2018 02:11:44 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime_feature-table_merge-seqs.xml Thu May 24 02:11:44 2018 -0400 @@ -0,0 +1,58 @@ +<?xml version="1.0" ?> +<tool id="qiime_feature-table_merge-seqs" name="qiime feature-table merge-seqs" version="2018.4"> + <description> - Combine collections of feature sequences</description> + <requirements> + <requirement type="package" version="2018.4">qiime2</requirement> + </requirements> + <command> + <![CDATA[ + qiime feature-table merge-seqs + + #def list_dict_to_string(list_dict): + #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') + #for d in list_dict[1:]: + #set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name') + #end for + #return $file_list + #end def + + + --i-data=$list_dict_to_string($input_files_idata) + #if str($cmdconfig) != 'None': + --cmd-config=$cmdconfig + #end if + --o-merged-data=omergeddata; + cp omergeddata.qza $omergeddata; + ]]> + </command> + <inputs> + <repeat name="input_files_idata" optional="False" title="--i-data"> + <param format="qza,no_unzip.zip" label="--i-data: PATH List[FeatureData[Sequence]] The collection of feature sequences to be merged. [required]" name="additional_input" type="data"/> + </repeat> + <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/> + </inputs> + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: merged-data.qza" name="omergeddata"/> + </outputs> + <help> + <![CDATA[ +Combine collections of feature sequences +----------------------------------------- + +Combines feature data objects which may or may not contain data for the +same features. If different feature data is present for the same feature id +in the inputs, the data from the first will be propagated to the result. + +Parameters +---------- +data : List[FeatureData[Sequence]] + The collection of feature sequences to be merged. + +Returns +------- +merged_data : FeatureData[Sequence] + The resulting collection of feature sequences containing all feature + sequences provided. + ]]> + </help> +</tool>