diff qiime_feature-table_tabulate-seqs.xml @ 0:09b7bcb72fa7 draft

Uploaded
author florianbegusch
date Thu, 24 May 2018 02:11:44 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime_feature-table_tabulate-seqs.xml	Thu May 24 02:11:44 2018 -0400
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+<?xml version="1.0" ?>
+<tool id="qiime_feature-table_tabulate-seqs" name="qiime feature-table tabulate-seqs" version="2018.4">
+	<description> - View sequence associated with each feature</description>
+	<requirements>
+		<requirement type="package" version="2018.4">qiime2</requirement>
+	</requirements>
+	<command>
+	<![CDATA[
+	qiime feature-table tabulate-seqs --i-data=$idata
+
+	#if str($cmdconfig) != 'None':
+	 --cmd-config=$cmdconfig
+	#end if
+	 --o-visualization=ovisualization;
+
+	qiime tools export ovisualization.qzv --output-dir out   && mkdir -p '$ovisualization.files_path'
+	&& cp -r out/* '$ovisualization.files_path'
+	&& mv '$ovisualization.files_path/index.html' '$ovisualization'
+	]]>
+	</command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-data: FeatureData[Sequence] The feature sequences to be tabulated. [required]" name="idata" optional="False" type="data"/>
+		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
+	</outputs>
+	<help>
+		<![CDATA[
+View sequence associated with each feature
+-------------------------------------------
+
+Generate tabular view of feature identifier to sequence mapping, including
+links to BLAST each sequence against the NCBI nt database.
+
+Parameters
+----------
+data : FeatureData[Sequence]
+    The feature sequences to be tabulated.
+
+Returns
+-------
+visualization : Visualization
+		\
+	]]>
+	</help>
+</tool>