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1 <?xml version="1.0" ?>
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2 <tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis"
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3 version="2020.8">
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4 <description>Procrustes Analysis</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime diversity procrustes-analysis
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10
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11 --i-reference=$ireference
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12
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13 --i-other=$iother
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15 --p-dimensions=$pdimensions
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16
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17 --o-transformed-reference=otransformedreference
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18
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19 --o-transformed-other=otransformedother
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20
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21 #if str($examples) != 'None':
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22 --examples=$examples
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23 #end if
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24
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25 ;
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26 cp otransformedother.qza $otransformedother
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27
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28 ]]></command>
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29 <inputs>
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30 <param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT The ordination matrix to which data is fitted to. PCoAResults [required]" name="ireference" optional="False" type="data" />
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31 <param format="qza,no_unzip.zip" label="--i-other: ARTIFACT The ordination matrix that\'s fitted to the PCoAResults reference ordination. [required]" name="iother" optional="False" type="data" />
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32 <param label="--p-dimensions: INTEGER Range(1, None) [default: 5]" min="1" name="pdimensions" optional="True" type="integer" value="5" />
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33 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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34
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35 </inputs>
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36
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37 <outputs>
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38 <data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference" />
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39 <data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother" />
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40
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41 </outputs>
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42
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43 <help><![CDATA[
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44 Procrustes Analysis
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45 ###############################################################
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46
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47 Fit two ordination matrices with Procrustes analysis
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48
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49 Parameters
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50 ----------
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51 reference : PCoAResults
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52 The ordination matrix to which data is fitted to.
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53 other : PCoAResults
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54 The ordination matrix that's fitted to the reference ordination.
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55 dimensions : Int % Range(1, None), optional
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56
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57 Returns
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58 -------
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59 transformed_reference : PCoAResults
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60 A normalized version of the "reference" ordination matrix.
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61 transformed_other : PCoAResults
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62 A normalized and fitted version of the "other" ordination matrix.
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63 ]]></help>
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64 <macros>
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65 <import>qiime_citation.xml</import>
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66 </macros>
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67 <expand macro="qiime_citation"/>
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68 </tool> |
