|
0
|
1 <?xml version="1.0" ?>
|
|
|
2 <tool id="qiime_sample-classifier_predict-classification" name="qiime sample-classifier predict-classification" version="2019.4">
|
|
|
3 <description> - Use trained classifier to predict target values for new samples.</description>
|
|
|
4 <requirements>
|
|
|
5 <requirement type="package" version="2019.4">qiime2</requirement>
|
|
|
6 </requirements>
|
|
|
7 <command><![CDATA[
|
|
|
8 qiime sample-classifier predict-classification
|
|
|
9
|
|
|
10 --i-table=$itable
|
|
|
11 --i-sample-estimator=$isampleestimator
|
|
|
12
|
|
|
13 #set $pnjobs = '${GALAXY_SLOTS:-4}'
|
|
|
14
|
|
|
15 #if str($pnjobs):
|
|
|
16 --p-n-jobs="$pnjobs"
|
|
|
17 #end if
|
|
|
18
|
|
|
19 --o-predictions=opredictions
|
|
|
20 ;
|
|
|
21 cp opredictions.qza $opredictions
|
|
|
22 ]]></command>
|
|
|
23 <inputs>
|
|
|
24 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table containing all features that should be used for target prediction. [required]" name="itable" optional="False" type="data"/>
|
|
|
25 <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier] Sample classifier trained with fit_classifier. [required]" name="isampleestimator" optional="False" type="data"/>
|
|
|
26 </inputs>
|
|
|
27 <outputs>
|
|
|
28 <data format="qza" label="${tool.name} on ${on_string}: predictions.qza" name="opredictions"/>
|
|
|
29 </outputs>
|
|
|
30 <help><![CDATA[
|
|
|
31 Use trained classifier to predict target values for new samples.
|
|
|
32 ################################################################
|
|
|
33
|
|
|
34 Use trained estimator to predict target values for new samples. These will
|
|
|
35 typically be unseen samples, e.g., test data (derived manually or from
|
|
|
36 split_table) or samples with unknown values, but can theoretically be any
|
|
|
37 samples present in a feature table that contain overlapping features with
|
|
|
38 the feature table used to train the estimator.
|
|
|
39
|
|
|
40 Parameters
|
|
|
41 ----------
|
|
|
42 table : FeatureTable[Frequency]
|
|
|
43 Feature table containing all features that should be used for target
|
|
|
44 prediction.
|
|
|
45 sample_estimator : SampleEstimator[Classifier]
|
|
|
46 Sample classifier trained with fit_classifier.
|
|
|
47
|
|
|
48 Returns
|
|
|
49 -------
|
|
|
50 predictions : SampleData[ClassifierPredictions]
|
|
|
51 Predicted target values for each input sample.
|
|
|
52 ]]></help>
|
|
|
53 <macros>
|
|
|
54 <import>qiime_citation.xml</import>
|
|
|
55 </macros>
|
|
|
56 <expand macro="qiime_citation"/>
|
|
|
57 </tool>
|
