|
29
|
1 <?xml version="1.0" ?>
|
|
|
2 <tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot"
|
|
|
3 version="2020.8">
|
|
|
4 <description>Principal Coordinate Analysis Biplot</description>
|
|
|
5 <requirements>
|
|
|
6 <requirement type="package" version="2020.8">qiime2</requirement>
|
|
|
7 </requirements>
|
|
|
8 <command><![CDATA[
|
|
|
9 qiime diversity pcoa-biplot
|
|
|
10
|
|
|
11 --i-pcoa=$ipcoa
|
|
|
12
|
|
|
13 --i-features=$ifeatures
|
|
|
14
|
|
|
15 --o-biplot=obiplot
|
|
|
16
|
|
|
17 #if str($examples) != 'None':
|
|
|
18 --examples=$examples
|
|
|
19 #end if
|
|
|
20
|
|
|
21 ;
|
|
|
22 cp obiplot.qza $obiplot
|
|
|
23
|
|
|
24 ]]></command>
|
|
|
25 <inputs>
|
|
|
26 <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT The PCoA where the features will be projected onto. PCoAResults [required]" name="ipcoa" optional="False" type="data" />
|
|
|
27 <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix [required]" name="ifeatures" optional="False" type="data" />
|
|
|
28 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
|
|
|
29
|
|
|
30 </inputs>
|
|
|
31
|
|
|
32 <outputs>
|
|
|
33 <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot" />
|
|
|
34
|
|
|
35 </outputs>
|
|
|
36
|
|
|
37 <help><![CDATA[
|
|
|
38 Principal Coordinate Analysis Biplot
|
|
|
39 ###############################################################
|
|
|
40
|
|
|
41 Project features into a principal coordinates matrix. The features used
|
|
|
42 should be the features used to compute the distance matrix. It is
|
|
|
43 recommended that these variables be normalized in cases of dimensionally
|
|
|
44 heterogeneous physical variables.
|
|
|
45
|
|
|
46 Parameters
|
|
|
47 ----------
|
|
|
48 pcoa : PCoAResults
|
|
|
49 The PCoA where the features will be projected onto.
|
|
|
50 features : FeatureTable[RelativeFrequency]
|
|
|
51 Variables to project onto the PCoA matrix
|
|
|
52
|
|
|
53 Returns
|
|
|
54 -------
|
|
|
55 biplot : PCoAResults % Properties('biplot')
|
|
|
56 The resulting PCoA matrix.
|
|
|
57 ]]></help>
|
|
|
58 <macros>
|
|
|
59 <import>qiime_citation.xml</import>
|
|
|
60 </macros>
|
|
|
61 <expand macro="qiime_citation"/>
|
|
|
62 </tool> |
