|
0
|
1 <?xml version="1.0" ?>
|
|
9
|
2 <tool id="qiime_demux_subsample-single" name="qiime demux subsample-single" version="2019.7">
|
|
0
|
3 <description> - Subsample single-end sequences without replacement.</description>
|
|
|
4 <requirements>
|
|
9
|
5 <requirement type="package" version="2019.7">qiime2</requirement>
|
|
0
|
6 </requirements>
|
|
|
7 <command><![CDATA[
|
|
|
8 qiime demux subsample-single
|
|
|
9
|
|
|
10 --i-sequences=$isequences
|
|
|
11 --p-fraction="$pfraction"
|
|
|
12
|
|
|
13 --o-subsampled-sequences=osubsampledsequences
|
|
|
14 ;
|
|
|
15 cp osubsampledsequences.qza $osubsampledsequences
|
|
|
16 ]]></command>
|
|
|
17 <inputs>
|
|
|
18 <param format="qza,no_unzip.zip" label="--i-sequences: ARTIFACT SampleData[SequencesWithQuality | PairedEndSequencesWithQuality] The demultiplexed sequences to be subsampled. [required]" name="isequences" optional="False" type="data"/>
|
|
|
19 <param label="--p-fraction: PROPORTION Range(0, 1, inclusive_start=False) The fraction of sequences to retain in subsample. [required]" name="pfraction" optional="False" exclude_min="True" min="0" max="1" value="" type="float"/>
|
|
|
20 </inputs>
|
|
|
21 <outputs>
|
|
|
22 <data format="qza" label="${tool.name} on ${on_string}: subsampledsequences.qza" name="osubsampledsequences"/>
|
|
|
23 </outputs>
|
|
|
24 <help><![CDATA[
|
|
|
25 Subsample single-end sequences without replacement.
|
|
|
26 ###################################################
|
|
|
27
|
|
|
28 Generate a random subsample of single-end sequences containing
|
|
|
29 approximately the fraction of input sequences specified by the fraction
|
|
|
30 parameter. The number of output samples will always be equal to the number
|
|
|
31 of input samples, even if some of those samples contain no sequences after
|
|
|
32 subsampling.
|
|
|
33
|
|
|
34 Parameters
|
|
|
35 ----------
|
|
|
36 sequences : SampleData[SequencesWithQuality | PairedEndSequencesWithQuality]
|
|
|
37 The demultiplexed sequences to be subsampled.
|
|
|
38 fraction : Float % Range(0, 1, inclusive_start=False)
|
|
|
39 The fraction of sequences to retain in subsample.
|
|
|
40
|
|
|
41 Returns
|
|
|
42 -------
|
|
|
43 subsampled_sequences : SampleData[SequencesWithQuality]
|
|
|
44 The subsampled sequences.
|
|
|
45 ]]></help>
|
|
|
46 <macros>
|
|
|
47 <import>qiime_citation.xml</import>
|
|
|
48 </macros>
|
|
|
49 <expand macro="qiime_citation"/>
|
|
|
50 </tool>
|
