Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_composition_add-pseudocount.xml @ 0:370e0b6e9826 draft
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| author | florianbegusch |
|---|---|
| date | Wed, 17 Jul 2019 03:05:17 -0400 |
| parents | |
| children | a025a4a89e07 |
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| -1:000000000000 | 0:370e0b6e9826 |
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| 1 <?xml version="1.0" ?> | |
| 2 <tool id="qiime_composition_add-pseudocount" name="qiime composition add-pseudocount" version="2019.4"> | |
| 3 <description> - Add pseudocount to table</description> | |
| 4 <requirements> | |
| 5 <requirement type="package" version="2019.4">qiime2</requirement> | |
| 6 </requirements> | |
| 7 <command><![CDATA[ | |
| 8 qiime composition add-pseudocount | |
| 9 | |
| 10 --i-table=$itable | |
| 11 --o-composition-table=ocompositiontable | |
| 12 | |
| 13 #if $ppseudocount: | |
| 14 --p-pseudocount=$ppseudocount | |
| 15 #end if | |
| 16 ; | |
| 17 cp ocompositiontable.qza $ocompositiontable | |
| 18 ]]></command> | |
| 19 <inputs> | |
| 20 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to which pseudocounts should be added. [required]" name="itable" optional="False" type="data"/> | |
| 21 <param label="--p-pseudocount: INTEGER The value to add to all counts in the feature table. [default: 1]" name="ppseudocount" optional="True" type="integer" value="1"/> | |
| 22 </inputs> | |
| 23 <outputs> | |
| 24 <data format="qza" label="${tool.name} on ${on_string}: compositiontable.qza" name="ocompositiontable"/> | |
| 25 </outputs> | |
| 26 <help><![CDATA[ | |
| 27 Add pseudocount to table | |
| 28 ######################## | |
| 29 | |
| 30 Increment all counts in table by pseudocount. | |
| 31 | |
| 32 Parameters | |
| 33 ---------- | |
| 34 table : FeatureTable[Frequency] | |
| 35 The feature table to which pseudocounts should be added. | |
| 36 pseudocount : Int, optional | |
| 37 The value to add to all counts in the feature table. | |
| 38 | |
| 39 Returns | |
| 40 ------- | |
| 41 composition_table : FeatureTable[Composition] | |
| 42 The resulting feature table. | |
| 43 ]]></help> | |
| 44 <macros> | |
| 45 <import>qiime_citation.xml</import> | |
| 46 </macros> | |
| 47 <expand macro="qiime_citation"/> | |
| 48 </tool> |