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comparison qiime2/qiime_demux_subsample-paired.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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1 <?xml version="1.0" ?>
2 <tool id="qiime_demux_subsample-paired" name="qiime demux subsample-paired" version="2019.4">
3 <description> - Subsample paired-end sequences without replacement.</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime demux subsample-paired
9
10 --i-sequences=$isequences
11 --p-fraction="$pfraction"
12
13 --o-subsampled-sequences=osubsampledsequences
14 ;
15 cp osubsampledsequences.qza $osubsampledsequences
16 ]]></command>
17 <inputs>
18 <param format="qza,no_unzip.zip" label="--i-sequences: ARTIFACT SampleData[PairedEndSequencesWithQuality] The demultiplexed sequences to be subsampled. [required]" name="isequences" optional="False" type="data"/>
19 <param label="--p-fraction: PROPORTION Range(0, 1, inclusive_start=False) The fraction of sequences to retain in subsample. [required]" name="pfraction" optional="False" exclude_min="True" min="0" max="1" value="" type="float"/>
20 </inputs>
21 <outputs>
22 <data format="qza" label="${tool.name} on ${on_string}: subsampledsequences.qza" name="osubsampledsequences"/>
23 </outputs>
24 <help><![CDATA[
25 Subsample paired-end sequences without replacement.
26 ###################################################
27
28 Generate a random subsample of paired-end sequences containing
29 approximately the fraction of input sequences specified by the fraction
30 parameter. The number of output samples will always be equal to the number
31 of input samples, even if some of those samples contain no sequences after
32 subsampling.
33
34 Parameters
35 ----------
36 sequences : SampleData[PairedEndSequencesWithQuality]
37 The demultiplexed sequences to be subsampled.
38 fraction : Float % Range(0, 1, inclusive_start=False)
39 The fraction of sequences to retain in subsample.
40
41 Returns
42 -------
43 subsampled_sequences : SampleData[PairedEndSequencesWithQuality]
44 The subsampled sequences.
45 ]]></help>
46 <macros>
47 <import>qiime_citation.xml</import>
48 </macros>
49 <expand macro="qiime_citation"/>
50 </tool>