Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_diversity_pcoa-biplot.xml @ 0:370e0b6e9826 draft
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| author | florianbegusch |
|---|---|
| date | Wed, 17 Jul 2019 03:05:17 -0400 |
| parents | |
| children | f190567fe3f6 |
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| -1:000000000000 | 0:370e0b6e9826 |
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| 1 <?xml version="1.0" ?> | |
| 2 <tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot" version="2019.4"> | |
| 3 <description> - Principal Coordinate Analysis Biplot</description> | |
| 4 <requirements> | |
| 5 <requirement type="package" version="2019.4">qiime2</requirement> | |
| 6 </requirements> | |
| 7 <command><![CDATA[ | |
| 8 qiime diversity pcoa-biplot | |
| 9 | |
| 10 --i-pcoa=$ipcoa | |
| 11 --i-features=$ifeatures | |
| 12 | |
| 13 --o-biplot=obiplot | |
| 14 ; | |
| 15 cp obiplot.qza $obiplot | |
| 16 ]]></command> | |
| 17 <inputs> | |
| 18 <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT The PCoA where the features will be projected onto. PCoAResults [required]" name="ipcoa" optional="False" type="data"/> | |
| 19 <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix [required]" name="ifeatures" optional="False" type="data"/> | |
| 20 </inputs> | |
| 21 <outputs> | |
| 22 <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot"/> | |
| 23 </outputs> | |
| 24 <help><![CDATA[ | |
| 25 Principal Coordinate Analysis Biplot | |
| 26 #################################### | |
| 27 | |
| 28 Project features into a principal coordinates matrix. The features used | |
| 29 should be the features used to compute the distance matrix. It is | |
| 30 recommended that these variables be normalized in cases of dimensionally | |
| 31 heterogeneous physical variables. | |
| 32 | |
| 33 Parameters | |
| 34 ---------- | |
| 35 pcoa : PCoAResults | |
| 36 The PCoA where the features will be projected onto. | |
| 37 features : FeatureTable[RelativeFrequency] | |
| 38 Variables to project onto the PCoA matrix | |
| 39 | |
| 40 Returns | |
| 41 ------- | |
| 42 biplot : PCoAResults % Properties('biplot') | |
| 43 The resulting PCoA matrix. | |
| 44 ]]></help> | |
| 45 <macros> | |
| 46 <import>qiime_citation.xml</import> | |
| 47 </macros> | |
| 48 <expand macro="qiime_citation"/> | |
| 49 </tool> |