Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_diversity_procrustes-analysis.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | de4c22a52df4 |
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1 <?xml version="1.0" ?> | |
2 <tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis" version="2019.4"> | |
3 <description> - Procrustes Analysis</description> | |
4 <requirements> | |
5 <requirement type="package" version="2019.4">qiime2</requirement> | |
6 </requirements> | |
7 <command><![CDATA[ | |
8 qiime diversity procrustes-analysis | |
9 | |
10 --i-reference=$ireference | |
11 --i-other=$iother | |
12 | |
13 #if $pdimensions: | |
14 --p-dimensions=$pdimensions | |
15 #end if | |
16 | |
17 --o-transformed-reference=otransformedreference | |
18 --o-transformed-other=otransformedother | |
19 ; | |
20 cp otransformedreference.qza $otransformedreference; | |
21 cp otransformedother.qza $otransformedother | |
22 ]]></command> | |
23 <inputs> | |
24 <param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT The ordination matrix to which data is fitted to. PCoAResults [required]" name="ireference" optional="False" type="data"/> | |
25 <param format="qza,no_unzip.zip" label="--i-other: ARTIFACT The ordination matrix that's fitted to the PCoAResults reference ordination. [required]" name="iother" optional="False" type="data"/> | |
26 <param label="--p-dimensions: INTEGER Range(1, None) [default: 5]" name="pdimensions" optional="True" type="integer" min="1" value="5"/> | |
27 </inputs> | |
28 <outputs> | |
29 <data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference"/> | |
30 <data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother"/> | |
31 </outputs> | |
32 <help><![CDATA[ | |
33 Procrustes Analysis | |
34 ################### | |
35 | |
36 Fit two ordination matrices with Procrustes analysis | |
37 | |
38 Parameters | |
39 ---------- | |
40 reference : PCoAResults | |
41 The ordination matrix to which data is fitted to. | |
42 other : PCoAResults | |
43 The ordination matrix that's fitted to the reference ordination. | |
44 dimensions : Int % Range(1, None), optional | |
45 \ | |
46 | |
47 Returns | |
48 ------- | |
49 transformed_reference : PCoAResults | |
50 A normalized version of the "reference" ordination matrix. | |
51 transformed_other : PCoAResults | |
52 A normalized and fitted version of the "other" ordination matrix. | |
53 ]]></help> | |
54 <macros> | |
55 <import>qiime_citation.xml</import> | |
56 </macros> | |
57 <expand macro="qiime_citation"/> | |
58 </tool> |